PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG035359t1
Common NameTCM_035359
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 334aa    MW: 37626.9 Da    PI: 9.6622
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG035359t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-181762147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Thecc1EG035359t1 17 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 62
                      899*****************************.***********996 PP
2Myb_DNA-binding60.34.2e-1969112146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Thecc1EG035359t1  69 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 112
                       679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.5811263IPR017930Myb domain
SuperFamilySSF466891.16E-2916110IPR009057Homeodomain-like
SMARTSM007178.4E-151665IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-271870IPR009057Homeodomain-like
CDDcd001676.86E-142061No hitNo description
PfamPF139212.5E-172080No hitNo description
PROSITE profilePS5129428.36664118IPR017930Myb domain
SMARTSM007172.4E-1668116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2171117IPR009057Homeodomain-like
CDDcd001671.18E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEDSGAASSD DVKTCPRGHW RPAEDEKLRQ LVEQYGAQNW NSIAEKLQGR SGKSCRLRWF  60
NQLDPRINRR PFTEEEEERL LAAHRIHGNK WALIARLFPG RTDNAVKNHW HVIMARKQRE  120
QSKLCGKRSF QDGLSDSKLS STGFTPRKAR CQEAFSSRIG FGDSRFLEFQ NPSKERIFSV  180
SYSSTSSPSW TFASSTMMPS NNSSSAELSR RDGKDYLSGS GSSYYSMENS KILDQSLYKY  240
HSNASAYCSS LKNSSAFGLP NYRRVVPSPF GYLKLGDNYE SNNGVMRKEL MSVIDNAPKL  300
ANIRVSSQQE NDDDSIKQKD TPFIDFLGVG ISS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32171177107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270821e-116HQ527082.1 Gossypium herbaceum clone NBRI_B_1735 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019337.10.0PREDICTED: transcription repressor MYB4
TrEMBLA0A061FIQ00.0A0A061FIQ0_THECC; Myb domain protein 52
STRINGEOY165620.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16592913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-64myb domain protein 52
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]