PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034902t1
Common NameTCM_034902
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 337aa    MW: 37515.2 Da    PI: 6.7906
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034902t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.34.6e-201461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++lv+++kq+G g+W++ ++  g++R++k+c++rw +yl
  Thecc1EG034902t1 14 KGPWTPEEDQKLVQYIKQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding53.45.8e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++++E++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG034902t1  67 RGKFSQDEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.354961IPR017930Myb domain
SuperFamilySSF466891.05E-3111108IPR009057Homeodomain-like
SMARTSM007171.9E-161363IPR001005SANT/Myb domain
PfamPF002492.7E-181461IPR001005SANT/Myb domain
CDDcd001671.95E-131661No hitNo description
PROSITE profilePS5129426.68862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2765117IPR009057Homeodomain-like
SMARTSM007173.7E-1666114IPR001005SANT/Myb domain
PfamPF002497.4E-1667112IPR001005SANT/Myb domain
CDDcd001674.56E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVQYIK QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQDEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHQPRT DIFASLPQLI ALANLRDLVE STNPLDDHTV RLQAEAVQLA RLQYLQFLVQ  180
SAASMTNNSY SQNGIADMEA FNLLNSSVPH IKENQVLNSA PISLGNATSQ PLHHPALLSH  240
LPDPQVPFSF QTSLNCEKTS LNSEMGHCSN FTIVSQGDNQ TDNSSWLLPS PTLPPTVTET  300
SISNPGEVSS TSSYTGAASP YWHELYFEDS IMHEIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5783832e-41JX578383.1 Gossypium hirsutum clone NBRI_GE10395 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981110.10.0PREDICTED: protein ODORANT1 isoform X2
SwissprotQ9S9Z21e-128MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A061FF800.0A0A061FF80_THECC; Myb domain protein 93
STRINGEOY160000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-124myb domain protein 93
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]