PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034516t2

Common Name

TCM_034516

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 607aa MW: 63894.6 Da PI: 6.1251

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034516t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.1e-08	205	249	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ av++ G g+W+ I r R++ q+ rw Thecc1EG034516t2 205 RKPWSEAEDRELIAAVQKCGVGNWANILRGDFkGDRSASQLAQRW 249 789************************984223589999999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.18	200	257	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-12	201	255	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.8E-12	202	258	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-10	204	255	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-6	205	249	IPR001005	SANT/Myb domain
CDD	cd11660	3.55E-13	206	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MIEKTKKQKK GSVSEEDISS LLQRYTATTV LALLQEVAQF PGVKLNWNAL VKKTSTGISN 60 AREYQMLWRH LAYRDVLLEK LEDGAEPLDD ESDLEYELEP CPSVSSEASA EAAACVKVLI 120 ASGLPSDSSL PNSSTVEAPL TINIPNGQSF RASSENSQPT CSMRGMNITV PVSVQKQILP 180 AVTSAETSLE GNGLSGANLP ARRKRKPWSE AEDRELIAAV QKCGVGNWAN ILRGDFKGDR 240 SASQLAQRWT IIKKRLGNLN VEGNSTIPQL SEAQLATRSA LSLALDMPDK NLTSACPSNP 300 ALKTTSSNSA LPSTSGEASV PAQSQFQQAH NQPQKGPITS VPAQNLSQQG PVASLQVSNQ 360 SQQGPMITKT SPGSSGSTLK SRVGLKKPPA KSFSSTGSIL DATAVAAGAR IGGPKAAASL 420 LKAAQSKNAI HIMTSSGSSA KPLMPSVKSP IQRVEHTPSA SSSSLNVSIQ QCNTVTSSPT 480 VDGTLKEELD AAGENKSFMS DGLPKELVKE NGACVSKNEQ GEGVREDKPA VSNLESESKN 540 LEVVAAHSNE KSMVEGNQLD AITNPVEESQ NAIDCSLIKK SDSQPEASIN DGCTKNLEVL 600 STDPAT*

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MIEKTKKQKK GSVSEEDISS LLQRYTATTV LALLQEVAQF PGVKLNWNAL VKKTSTGISN  60
AREYQMLWRH LAYRDVLLEK LEDGAEPLDD ESDLEYELEP CPSVSSEASA EAAACVKVLI  120
ASGLPSDSSL PNSSTVEAPL TINIPNGQSF RASSENSQPT CSMRGMNITV PVSVQKQILP  180
AVTSAETSLE GNGLSGANLP ARRKRKPWSE AEDRELIAAV QKCGVGNWAN ILRGDFKGDR  240
SASQLAQRWT IIKKRLGNLN VEGNSTIPQL SEAQLATRSA LSLALDMPDK NLTSACPSNP  300
ALKTTSSNSA LPSTSGEASV PAQSQFQQAH NQPQKGPITS VPAQNLSQQG PVASLQVSNQ  360
SQQGPMITKT SPGSSGSTLK SRVGLKKPPA KSFSSTGSIL DATAVAAGAR IGGPKAAASL  420
LKAAQSKNAI HIMTSSGSSA KPLMPSVKSP IQRVEHTPSA SSSSLNVSIQ QCNTVTSSPT  480
VDGTLKEELD AAGENKSFMS DGLPKELVKE NGACVSKNEQ GEGVREDKPA VSNLESESKN  540
LEVVAAHSNE KSMVEGNQLD AITNPVEESQ NAIDCSLIKK SDSQPEASIN DGCTKNLEVL  600
STDPAT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981780.1	0.0	PREDICTED: uncharacterized protein LOC18591811 isoform X2
TrEMBL	A0A061FEW7	0.0	A0A061FEW7_THECC; Homeodomain-like superfamily protein isoform 2
STRING	EOY15457	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.2	6e-69	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG034516t2
Entrez Gene	18591811

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]