PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034516t1
Common NameTCM_034516
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 675aa    MW: 70838.2 Da    PI: 6.2128
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034516t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.1e-08205249144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                       r++W++ Ed  l+ av++ G g+W+ I r      R++ q+  rw
  Thecc1EG034516t1 205 RKPWSEAEDRELIAAVQKCGVGNWANILRGDFkGDRSASQLAQRW 249
                       789************************984223589999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.18200257IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-12201255IPR009057Homeodomain-like
SuperFamilySSF466894.28E-12202258IPR009057Homeodomain-like
SMARTSM007171.1E-10204255IPR001005SANT/Myb domain
PfamPF002491.4E-6205249IPR001005SANT/Myb domain
CDDcd116604.27E-13206254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MIEKTKKQKK GSVSEEDISS LLQRYTATTV LALLQEVAQF PGVKLNWNAL VKKTSTGISN  60
AREYQMLWRH LAYRDVLLEK LEDGAEPLDD ESDLEYELEP CPSVSSEASA EAAACVKVLI  120
ASGLPSDSSL PNSSTVEAPL TINIPNGQSF RASSENSQPT CSMRGMNITV PVSVQKQILP  180
AVTSAETSLE GNGLSGANLP ARRKRKPWSE AEDRELIAAV QKCGVGNWAN ILRGDFKGDR  240
SASQLAQRWT IIKKRLGNLN VEGNSTIPQL SEAQLATRSA LSLALDMPDK NLTSACPSNP  300
ALKTTSSNSA LPSTSGEASV PAQSQFQQGN IASVQAQNLP QQGHIASVQG QNQSQQGPIT  360
SVSAHNQPQK GPITSVPAQN LSQQGPVASL QVSNQSQQGP MITKTSPGSS GSTLKSRVGL  420
KKPPAKSFSS TGSILDATAV AAGARIGGPK AAASLLKAAQ SKNAIHIMTS SGSSAKPLMP  480
SGKEVHSNVQ YVCTGLTTEP LSCPVTSSTL NPGSVKSPIQ RVEHTPSASS SSLNVSIQQC  540
NTVTSSPTVD GTLKEELDAA GENKSFMSDG LPKELVKENG ACVSKNEQGE GVREDKPAVS  600
NLESESKNLE VVAAHSNEKS MVEGNQLDAI TNPVEESQNA IDCSLIKKSD SQPEASINDG  660
CTKNLEVLST DPAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018232.20.0PREDICTED: uncharacterized protein LOC18591811 isoform X1
TrEMBLA0A061FFE50.0A0A061FFE5_THECC; Homeodomain-like superfamily protein isoform 1
STRINGEOY154570.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.21e-68MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]