PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033990t2
Common NameTCM_033990
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 362aa    MW: 39771.1 Da    PI: 5.3009
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033990t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.52.9e-11151177128
               NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                       F+ t ee    + +k ++g++l+  +vi++ + y++ P++Lp        + ++F  +++       +n  +++g+W+++ + +ev+s ++  
  Thecc1EG033990t2  15 FNCTHEEFF-TWFNKYTSGSPLPS-NVIDD-NPYRYRPQNLP--------KNFWFLISSN-------ENIDVEHGFWETKEEAREVFS-NSDI 88 
                       777888887.67788888999888.66655.89999999999........1244444333.......3456899**************.999* PP

               NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                       +g k+tL +y+g+ p g+kt+ vm+ +++
  Thecc1EG033990t2  89 IGWKTTLEYYEGQVPYGRKTEYVMQVFSI 117
                       ************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.9429140IPR003441NAC domain
SuperFamilySSF1019411.83E-1419137IPR003441NAC domain
PfamPF023657.8E-533116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MANPAASRPA DNIGFNCTHE EFFTWFNKYT SGSPLPSNVI DDNPYRYRPQ NLPKNFWFLI  60
SSNENIDVEH GFWETKEEAR EVFSNSDIIG WKTTLEYYEG QVPYGRKTEY VMQVFSITQK  120
ILSDDNEKKE KSSMCRLSLF HEMQKTVCSA GVETETRNHL TQPPVLDANS STRRVSSSNP  180
EVNKHDAVAG RLPVPEHHGE NLNEMDSFSG GVGFLELDDL NSPASPSSSS DNSSAMSLSS  240
GECFDAMALL QDLEDPVIEQ KDEGKKLNVS ASKKLDEVVI VPPTLGSVVS VEGSNSGSDE  300
SFKTAGSAPV SASKHAKGDQ RGEGPSSSSD SHMAASAGGR KRVPFRGMKK LRKKYLCFMP  360
F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017463.20.0PREDICTED: NAC domain-containing protein 30 isoform X1
RefseqXP_017981666.10.0PREDICTED: NAC domain-containing protein 30 isoform X1
RefseqXP_017981667.10.0PREDICTED: NAC domain-containing protein 30 isoform X1
RefseqXP_017981668.10.0PREDICTED: NAC domain-containing protein 30 isoform X1
RefseqXP_017981669.10.0PREDICTED: NAC domain-containing protein 30 isoform X1
TrEMBLA0A061FDD90.0A0A061FDD9_THECC; NAC domain-containing protein 72, putative isoform 1
STRINGEOY146880.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-09NAC domain containing protein 53
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]