PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG033990t1 | ||||||||
Common Name | TCM_033990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 39771.1 Da PI: 5.3009 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.5 | 2.9e-11 | 15 | 117 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 F+ t ee + +k ++g++l+ +vi++ + y++ P++Lp + ++F +++ +n +++g+W+++ + +ev+s ++ Thecc1EG033990t1 15 FNCTHEEFF-TWFNKYTSGSPLPS-NVIDD-NPYRYRPQNLP--------KNFWFLISSN-------ENIDVEHGFWETKEEAREVFS-NSDI 88 777888887.67788888999888.66655.89999999999........1244444333.......3456899**************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g k+tL +y+g+ p g+kt+ vm+ +++ Thecc1EG033990t1 89 IGWKTTLEYYEGQVPYGRKTEYVMQVFSI 117 ************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 15.942 | 9 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-14 | 19 | 137 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-5 | 33 | 116 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MANPAASRPA DNIGFNCTHE EFFTWFNKYT SGSPLPSNVI DDNPYRYRPQ NLPKNFWFLI 60 SSNENIDVEH GFWETKEEAR EVFSNSDIIG WKTTLEYYEG QVPYGRKTEY VMQVFSITQK 120 ILSDDNEKKE KSSMCRLSLF HEMQKTVCSA GVETETRNHL TQPPVLDANS STRRVSSSNP 180 EVNKHDAVAG RLPVPEHHGE NLNEMDSFSG GVGFLELDDL NSPASPSSSS DNSSAMSLSS 240 GECFDAMALL QDLEDPVIEQ KDEGKKLNVS ASKKLDEVVI VPPTLGSVVS VEGSNSGSDE 300 SFKTAGSAPV SASKHAKGDQ RGEGPSSSSD SHMAASAGGR KRVPFRGMKK LRKKYLCFMP 360 F* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017463.2 | 0.0 | PREDICTED: NAC domain-containing protein 30 isoform X1 | ||||
Refseq | XP_017981666.1 | 0.0 | PREDICTED: NAC domain-containing protein 30 isoform X1 | ||||
Refseq | XP_017981667.1 | 0.0 | PREDICTED: NAC domain-containing protein 30 isoform X1 | ||||
Refseq | XP_017981668.1 | 0.0 | PREDICTED: NAC domain-containing protein 30 isoform X1 | ||||
Refseq | XP_017981669.1 | 0.0 | PREDICTED: NAC domain-containing protein 30 isoform X1 | ||||
TrEMBL | A0A061FDD9 | 0.0 | A0A061FDD9_THECC; NAC domain-containing protein 72, putative isoform 1 | ||||
STRING | EOY14688 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13708 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 2e-09 | NAC domain containing protein 53 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG033990t1 |
Entrez Gene | 18591340 |
Publications ? help Back to Top | |||
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