PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033935t1

Common Name

TCM_033935

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 550aa MW: 61606.6 Da PI: 9.2637

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033935t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.1	6.6e-18	13	100	4	99
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 v+ s++++ +rl +p f ++ +g + + + l+ +sg sW v+l +k++ ++ +GW +Fv+++ ++ gDf+vF++dg+ f vkv Thecc1EG033935t1 13 VF--SSTSSANRLKIPVGFNRNLEGRTSG--SVLLRGPSGYSWVVEL--VRKDDDLLFVEGWADFVRDHSVECGDFLVFRYDGDLVF--DVKV 97 45..8889999*******888988655..6***********..9999**************************998777..9999 PP E-S CS B3 97 frk 99 f++ Thecc1EG033935t1 98 FDQ 100 987 PP
2	B3	52.8	7.1e-17	230	323	2	98
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 + ++++ +v+ s l +p +fa eh ++++++++l++++g W+v+ ++ +++l +GW +Fv++n++k+gD+++F++++ +fel+ Thecc1EG033935t1 230 VRIMKRFNVSGSYTLNIPYQFAMEHL--PKCKTEIVLRNLKGACWTVNSVPtTRVHTSHTLCGGWLGFVRSNEIKVGDICIFEFVR--KFELR 318 56667778888899******9996..34889***********954566666799*******************876..999 PP EEEE- CS B3 94 vkvfr 98 v+++r Thecc1EG033935t1 319 VHILR 323 **998 PP
3	B3	49.3	9.1e-16	439	528	4	96
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ + +v+ s l +p kf +++ + ++++++l++ +g+ W+v+ + k+++ +++ +GW Fv++n++k gD+++F+l+++ e++v+ Thecc1EG033935t1 439 IMRKFNVSGSYTLKIPYKFSKAYL--PYCKTEVVLRNMQGKWWTVNSVPDSKGRAvHTFCGGWMAFVRDNDIKMGDICIFELVNK--CEMYVH 527 566667788889******9995..457889***********6655555579999*******************9873..335777 PP E CS B3 96 v 96 + Thecc1EG033935t1 528 I 528 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-22	6	103	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.24E-23	7	103	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.53E-17	8	99	No hit	No description
PROSITE profile	PS50863	15.058	8	101	IPR003340	B3 DNA binding domain
SMART	SM01019	2.8E-12	10	101	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.1E-15	12	100	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	4.2E-23	220	323	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-25	222	324	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.33E-19	227	323	No hit	No description
PROSITE profile	PS50863	13.465	229	325	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-14	229	323	IPR003340	B3 DNA binding domain
SMART	SM01019	3.5E-14	229	325	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.5E-23	428	530	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.26E-25	430	530	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.87E-20	434	528	No hit	No description
PROSITE profile	PS50863	13.479	436	532	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-13	436	528	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-10	436	532	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MLKLRRRPHF LNVFSSTSSA NRLKIPVGFN RNLEGRTSGS VLLRGPSGYS WVVELVRKDD 60 DLLFVEGWAD FVRDHSVECG DFLVFRYDGD LVFDVKVFDQ SSCEKEAAFH CKCSQGGSEY 120 DRIVGQKRGR EDGGVSLDQD CEGLVKRTRE SSSEFDRDVA DKEHCGYEPI LAAKTRRGLA 180 SCDENNEGTI LKTSGTEDLN LHGGGCTPMV AEFEEKKVAQ SFNSSFPFFV RIMKRFNVSG 240 SYTLNIPYQF AMEHLPKCKT EIVLRNLKGA CWTVNSVPTT RVHTSHTLCG GWLGFVRSNE 300 IKVGDICIFE FVRKFELRVH ILRVGGEDPD RQSGKAVSNV LINRSDATLP IKFVKKSSKV 360 HSKSMKKVQM CDNKGFKMLD KKKYGNAAKK SASVALCSLS RSGNEKQEAA IGGLRMMLAL 420 DEEKAAQSFA SGFPSFVRIM RKFNVSGSYT LKIPYKFSKA YLPYCKTEVV LRNMQGKWWT 480 VNSVPDSKGR AVHTFCGGWM AFVRDNDIKM GDICIFELVN KCEMYVHISG SGRKGLDHQH 540 ASTELLTLR*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MLKLRRRPHF LNVFSSTSSA NRLKIPVGFN RNLEGRTSGS VLLRGPSGYS WVVELVRKDD  60
DLLFVEGWAD FVRDHSVECG DFLVFRYDGD LVFDVKVFDQ SSCEKEAAFH CKCSQGGSEY  120
DRIVGQKRGR EDGGVSLDQD CEGLVKRTRE SSSEFDRDVA DKEHCGYEPI LAAKTRRGLA  180
SCDENNEGTI LKTSGTEDLN LHGGGCTPMV AEFEEKKVAQ SFNSSFPFFV RIMKRFNVSG  240
SYTLNIPYQF AMEHLPKCKT EIVLRNLKGA CWTVNSVPTT RVHTSHTLCG GWLGFVRSNE  300
IKVGDICIFE FVRKFELRVH ILRVGGEDPD RQSGKAVSNV LINRSDATLP IKFVKKSSKV  360
HSKSMKKVQM CDNKGFKMLD KKKYGNAAKK SASVALCSLS RSGNEKQEAA IGGLRMMLAL  420
DEEKAAQSFA SGFPSFVRIM RKFNVSGSYT LKIPYKFSKA YLPYCKTEVV LRNMQGKWWT  480
VNSVPDSKGR AVHTFCGGWM AFVRDNDIKM GDICIFELVN KCEMYVHISG SGRKGLDHQH  540
ASTELLTLR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017394.1	0.0	PREDICTED: B3 domain-containing protein Os11g0197600
TrEMBL	A0A061FJF3	0.0	A0A061FJF3_THECC; AP2/B3-like transcriptional factor family protein, putative isoform 1
STRING	EOY14619	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16907	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34400.1	3e-19	B3 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG033935t1
Entrez Gene	18591287

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]