PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G34400.1
Common NameF10M10.170
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 397aa    MW: 45678.1 Da    PI: 4.7782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G34400.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.7e-1916105198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ff+v+   ++++s  +v+p ++ +++   ++ +kt++l+ + g sW+v    + k++++++++GW +Fv++n L++gDf++F ++g + f   v++fr
  AT4G34400.1  16 FFTVF--VSHFSSEFMVIPVSYYDHIP--HRFPKTVILRGPGGCSWKVAT--EIKDDEVLFSQGWPKFVRDNTLNDGDFLTFAYNGAHIF--EVSIFR 105
                  66666..77889999********7776..55999****************..********************************998888..888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-2113105IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-1714105No hitNo description
PROSITE profilePS5086314.19814107IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-2114105IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-1816107IPR003340B3 DNA binding domain
PfamPF023622.0E-1616105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-5298384IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4303395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-4313383IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MASSMASNDF QLPPRFFTVF VSHFSSEFMV IPVSYYDHIP HRFPKTVILR GPGGCSWKVA  60
TEIKDDEVLF SQGWPKFVRD NTLNDGDFLT FAYNGAHIFE VSIFRGYDAC KEISEVTELE  120
EEEEDSVISL SSEDTDTGAK SEMKNTVPEG RDKGKSKVEV VEDSDDDEEE DSVYSESSEE  180
TETDTDSEFK VAKPTIPKSQ KKGKKKEQVV ESSDDEEDEE EDSDSDYIET FGQLDIEENS  240
ISEEDSSYAP DKEDTATASF VKPKVANKVA NLKRKEAAKK RKKVDPMIKN PERYLDDPKN  300
IHFETNVKNR LYELLVHAQL VKDYCLRFGD YVNYIDRFGK LSAKTAKWKD QRVCIKRWMR  360
ICKRNKLKKE DRILCELLRK GTFVYAIKLH VIRGKDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-121511010104At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278282KKRKK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453527850.0
Genevisible253258_at0.0
Expression AtlasAT4G34400-
AtGenExpressAT4G34400-
ATTED-IIAT4G34400-
Function -- GeneRIF ? help Back to Top
  1. Authors identify and characterize TARGET OF FLC AND SVP1 (TFS1), a novel target gene of FLC and its interacting protein SHORT VEGETATIVE PHASE (SVP). TFS1 encodes a B3-type transcription factor, and tfs1 mutants are later flowering than wild-type, particularly under short days. (TFS1)
    [PMID: 30946745]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G34400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9SZ05
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G34400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937170.0AB493717.1 Arabidopsis thaliana At4g34400 mRNA for hypothetical protein, partial cds, clone: RAAt4g34400.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001320135.10.0AP2/B3-like transcriptional factor family protein
RefseqNP_195166.20.0AP2/B3-like transcriptional factor family protein
SwissprotQ9SZ050.0Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLA0A178V1J90.0A0A178V1J9_ARATH; Uncharacterized protein
STRINGAT4G34400.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Publications ? help Back to Top
  1. Ma S,Gong Q,Bohnert HJ
    Dissecting salt stress pathways.
    J. Exp. Bot., 2006. 57(5): p. 1097-107
    [PMID:16510518]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Van Leene J, et al.
    Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana.
    Mol. Syst. Biol., 2010. 6: p. 397
    [PMID:20706207]
  4. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  5. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]