PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033907t1

Common Name

TCM_033907

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 252aa MW: 28089.4 Da PI: 8.8506

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033907t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	35	80	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G ++W++I+r++ gR++k+c++rw + Thecc1EG033907t1 35 KGPWSAEEDRILTRLVERYGARNWSLISRYIK-GRSGKSCRLRWCNQ 80 79***************************9.*********985 PP
2	Myb_DNA-binding	54.5	2.7e-17	89	131	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIa+ ++ gRt++ +k++w++ Thecc1EG033907t1 89 PFSPAEDETILAAHARYGNR-WATIAKLLP-GRTDNAVKNHWNST 131 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.088	30	85	IPR017930	Myb domain
SuperFamily	SSF46689	9.73E-32	33	128	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-16	34	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-24	36	88	IPR009057	Homeodomain-like
CDD	cd00167	4.96E-15	37	79	No hit	No description
Pfam	PF13921	1.8E-17	38	96	No hit	No description
SMART	SM00717	2.4E-15	86	134	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.062	87	136	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-23	89	135	IPR009057	Homeodomain-like
CDD	cd00167	7.30E-12	89	132	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEAMNRCSSS TSSSDTSSSE SSLSARASNK AEKIKGPWSA EEDRILTRLV ERYGARNWSL 60 ISRYIKGRSG KSCRLRWCNQ LSPSVEHRPF SPAEDETILA AHARYGNRWA TIAKLLPGRT 120 DNAVKNHWNS TLKRRARGGQ QQQQQEQQQQ LQLLLNQEEQ IVQSHHQMEG GDNAFGSVGM 180 MMDEEALTAL TLAPPGSGVP SGSAVVVAER RSRDERVPAE FWDVMRDVIA REVREYMTTT 240 LSAETPGFPL R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	5e-41	32	136	1	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393793	2e-86	GQ393793.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0758 SSR marker CGR5849 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017355.1	0.0	PREDICTED: myb-related protein B
TrEMBL	A0A061FB48	0.0	A0A061FB48_THECC; Myb domain protein 77
STRING	EOY14580	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14553	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-58	myb domain protein 77

Link Out ? help Back to Top
Phytozome	Thecc1EG033907t1
Entrez Gene	18591263

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]