PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033446t1

Common Name

TCM_033446

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 522aa MW: 58582.3 Da PI: 4.7071

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033446t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.6	1.9e-109	144	512	1	372
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsP 89 lv+lLl+cAeav +d++la+++L+++ a+p gd++qR+ +f+ +L++rl+ +++ + ++ + + +e++ a++l+++++P Thecc1EG033446t1 144 LVHLLLACAEAVGCRDTQLANSMLCQIWASATPWGDSLQRVSYCFAAGLKSRLSL-LQNVNGNGTITNCAMDLplitREEKMEAFQLLYQTTP 235 68************************************************997.44444444444443332556689999******* PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 ++ f++++aN+aI +a++g++ +HiiD+++++ lQWp+L+++LasRpeg p+lRiTg+ s++ + ele+ + L + A++lg+++ef+++ Thecc1EG033446t1 236 YIAFGFMAANEAICQAAQGKDSLHIIDLGMEHTLQWPSLIRTLASRPEGLPTLRITGLTSNQ--DLLELEASMKSLVEDASSLGISLEFHMI- 325 ********************************************************66..9**********************6. PP GRAS 183 ak..rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 + + + l+ e+L++++gEa+ Vn++++lh+ ++es + + ++L+++k+l P+++++veq+a+hn++ Fl rfle+l+yysa+fdsle+ Thecc1EG033446t1 326 PDplTPSLLTRENLNLREGEAIFVNSIMHLHKYVKESRGSLK---AILQAIKKLGPTLLTMVEQDANHNGPFFLGRFLESLHYYSAIFDSLET 415 553577999*********************88776666...9******************************************* PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +lpr+s +r+k+Er +++ei+n+va eg++r+erhe++ +Wr++l++aGF+ + l+ +qa+++l+ ++ dgy++ +e+g+l+lgWk+rp Thecc1EG033446t1 416 SLPRHSPQRMKIERLHFAEEIRNIVAYEGSDRIERHERADQWRRQLGRAGFQVIGLK--CLSQARMMLSVYGCDGYTLGSEKGCLLLGWKGRP 506 ************************************************99885..89**************************** PP GRAS 367 LvsvSa 372 ++ +Sa Thecc1EG033446t1 507 IMLASA 512 **98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.378	118	496	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.6E-107	144	512	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MEGINGWLSF PLYESFNHDF AIRRFCRARV ELERGEWEEA MNEIESFSPD DETGTPHLAA 60 SEVDDLVDSF INMDDGDDED RDDRNCNKNQ DFHHFQGEID AFSMVNEDFR DELEMSGSCE 120 DFGVHEMVPS VEEVSHGVDQ GLHLVHLLLA CAEAVGCRDT QLANSMLCQI WASATPWGDS 180 LQRVSYCFAA GLKSRLSLLQ NVNGNGTITN CAMDLPLITR EEKMEAFQLL YQTTPYIAFG 240 FMAANEAICQ AAQGKDSLHI IDLGMEHTLQ WPSLIRTLAS RPEGLPTLRI TGLTSNQDLL 300 ELEASMKSLV EDASSLGISL EFHMIPDPLT PSLLTRENLN LREGEAIFVN SIMHLHKYVK 360 ESRGSLKAIL QAIKKLGPTL LTMVEQDANH NGPFFLGRFL ESLHYYSAIF DSLETSLPRH 420 SPQRMKIERL HFAEEIRNIV AYEGSDRIER HERADQWRRQ LGRAGFQVIG LKCLSQARMM 480 LSVYGCDGYT LGSEKGCLLL GWKGRPIMLA SALQLHNVSS S*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MEGINGWLSF PLYESFNHDF AIRRFCRARV ELERGEWEEA MNEIESFSPD DETGTPHLAA  60
SEVDDLVDSF INMDDGDDED RDDRNCNKNQ DFHHFQGEID AFSMVNEDFR DELEMSGSCE  120
DFGVHEMVPS VEEVSHGVDQ GLHLVHLLLA CAEAVGCRDT QLANSMLCQI WASATPWGDS  180
LQRVSYCFAA GLKSRLSLLQ NVNGNGTITN CAMDLPLITR EEKMEAFQLL YQTTPYIAFG  240
FMAANEAICQ AAQGKDSLHI IDLGMEHTLQ WPSLIRTLAS RPEGLPTLRI TGLTSNQDLL  300
ELEASMKSLV EDASSLGISL EFHMIPDPLT PSLLTRENLN LREGEAIFVN SIMHLHKYVK  360
ESRGSLKAIL QAIKKLGPTL LTMVEQDANH NGPFFLGRFL ESLHYYSAIF DSLETSLPRH  420
SPQRMKIERL HFAEEIRNIV AYEGSDRIER HERADQWRRQ LGRAGFQVIG LKCLSQARMM  480
LSVYGCDGYT LGSEKGCLLL GWKGRPIMLA SALQLHNVSS S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-63	151	512	26	377	Protein SCARECROW
5b3h_A	5e-63	151	512	25	376	Protein SCARECROW
5b3h_D	5e-63	151	512	25	376	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007022629.2	0.0	PREDICTED: scarecrow-like protein 23
TrEMBL	A0A061FI88	0.0	A0A061FI88_THECC; GRAS family transcription factor
STRING	EOY14154	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17612	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	8e-79	RGA-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG033446t1
Entrez Gene	18594894

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]