PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033025t1
Common NameTCM_033025
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 225aa    MW: 26177.1 Da    PI: 10.2055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033025t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.1e-13105189985
                       HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   9 dvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       d   +  rl+l k+++ +         + + +++++++ +d++g+++ +k+ ++ ++  ++ t+GWk+F k++ Lke D+v+  + 
  Thecc1EG033025t1 105 DLKDNqIRLSLNKNHVGKSfipllkehE-DVNKGIQVITYDPEGKEYPMKFVFWTSKMYVLTTSGWKRFYKDHALKESDIVTVWMF 189
                       4444435677777777666777776634.3458899********************9888999*****************985433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1897200IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-1497190No hitNo description
SMARTSM010193.9E-597201IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-1797202IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-10128197IPR003340B3 DNA binding domain
PROSITE profilePS508639.319139205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKKDHKDNKS KSIEEILNEG FLKENDINAA FILASFRSSA PDLEQKRREV LRQLKGKDKQ  60
ETARKRGQMI MLDKYQPPNI PPVATLAHLI GECSRPYSKQ LTETDLKDNQ IRLSLNKNHV  120
GKSFIPLLKE HEDVNKGIQV ITYDPEGKEY PMKFVFWTSK MYVLTTSGWK RFYKDHALKE  180
SDIVTVWMFR HRHTHNLCFA ITWRRSPTAP SVVRIQEKAT SSQY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021300354.11e-143putative B3 domain-containing protein At4g03170
TrEMBLA0A061FAT01e-168A0A061FAT0_THECC; Uncharacterized protein
STRINGEOY140131e-169(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-26B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]