PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG032403t1 | ||||||||
Common Name | TCM_032403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 173aa MW: 19620.3 Da PI: 8.4168 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.7 | 3.4e-19 | 24 | 71 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien+++r v fskR++g+lKKA LS L + e+ vi++s++g++y+ Thecc1EG032403t1 24 KKIENQRRRWVAFSKRKKGLLKKAAQLSMLSGEEIGVIVISEQGRVYT 71 68*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.245 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-20 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-19 | 17 | 87 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-16 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-17 | 25 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-16 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-16 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDGASTSKSR LKRKGSGRRR IEIKKIENQR RRWVAFSKRK KGLLKKAAQL SMLSGEEIGV 60 IVISEQGRVY TSDNADAVIH QYLSIKYDGQ DDNDMMGDEE KEPGKGVMDD GFWRTQPVDI 120 QKMDDGKLSL QEIEVFGEAL VDLKKNVAAR MEEIKGKEYL FDLNKTPDEQ FC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 4e-15 | 18 | 71 | 18 | 71 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 4e-15 | 18 | 71 | 18 | 71 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007022237.1 | 1e-123 | PREDICTED: MADS-box transcription factor 1 | ||||
TrEMBL | A0A061FAP0 | 1e-122 | A0A061FAP0_THECC; Uncharacterized protein | ||||
STRING | EOY13762 | 1e-122 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18369 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 8e-17 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG032403t1 |
Entrez Gene | 18594571 |
Publications ? help Back to Top | |||
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