PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG031868t1 | ||||||||
Common Name | TCM_031868 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | YABBY | ||||||||
Protein Properties | Length: 182aa MW: 20439.2 Da PI: 8.7611 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 170.9 | 8.8e-53 | 6 | 158 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +s++eq+Cy+ Cn Cn ilav+vP +slf++vtvrCG Ct+l svnla++ +a ++ + + ++++++ + s+s+ Thecc1EG031868t1 6 NSAPEQLCYIPCNLCNIILAVNVPCSSLFETVTVRCGQCTNLCSVNLATSFPSRAGKDI---Q-----VPSY--TSSEYRI-----DLGSSSR 83 6899*******************************************998877777663...1.....1111..2222222.....2222222 PP YABBY 97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++kl++ + + + + v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl Thecc1EG031868t1 84 CKNKLPKRATTVNTTPERvVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 158 223333333332222222389****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.6E-62 | 8 | 158 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-6 | 99 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MSSSNNSAPE QLCYIPCNLC NIILAVNVPC SSLFETVTVR CGQCTNLCSV NLATSFPSRA 60 GKDIQVPSYT SSEYRIDLGS SSRCKNKLPK RATTVNTTPE RVVNRPPDKR HRAPSLYNQF 120 IKEEIQRIKL NNPDITHREA FSTAAKNWAR FPHIHFGLML ETDNQPKLND DSTEHFQQLL 180 K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ526781 | 3e-45 | HQ526781.1 Gossypium herbaceum clone NBRI_A_1939 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017979558.1 | 1e-133 | PREDICTED: axial regulator YABBY 5 isoform X1 | ||||
Swissprot | Q8GW46 | 2e-76 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A061F7J4 | 1e-132 | A0A061F7J4_THECC; Plant-specific transcription factor YABBY family protein isoform 1 | ||||
STRING | EOY13320 | 1e-133 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5538 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 9e-79 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG031868t1 |
Entrez Gene | 18594238 |
Publications ? help Back to Top | |||
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