PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG031619t1 | ||||||||
Common Name | TCM_031619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 39527.2 Da PI: 8.2167 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.4 | 9.2e-56 | 14 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL kkv +++++ ++i+evd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++ Thecc1EG031619t1 14 LPPGFRFHPTDEELITYYLLKKVLDSSFTG-RAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIY 105 79*************************999.89***************99999**************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 s+ + +lvg+kktLvfy+grapkgek++Wvmheyrle Thecc1EG031619t1 106 SSkTCALVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 142 9745567****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-63 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 14 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-29 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0010160 | Biological Process | formation of organ boundary | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048504 | Biological Process | regulation of timing of organ formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MDSYHHFDNG DTHLPPGFRF HPTDEELITY YLLKKVLDSS FTGRAIAEVD LNKCEPWELP 60 EKAKMGEKEW YFFSLRDRKY PTGLRTNRAT EAGYWKATGK DREIYSSKTC ALVGMKKTLV 120 FYRGRAPKGE KSNWVMHEYR LEGKFAYHYL SRSSKDEWVI SRVFKKSGSG NGATSNTGGG 180 AKKTRMNASV ALYQEPSSPS SVSLPPLLDH TTTATATTAT SLTDRDSCSY DSQTQPEHVS 240 CFSTIAAAAA SAAATTTTAA HHAFNPGFDL AVPPPQMINN TFDPIARFSR NVGVSAFPSL 300 RSLQENLHLP FFFSPPALAA PPPHGGSSLN WGAVSEEGNG GSGAGGKMSM GSTELDCMWT 360 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-52 | 14 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-52 | 14 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-52 | 14 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-52 | 14 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-52 | 14 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 14 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 14 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 14 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 14 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 14 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 14 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 14 | 171 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-52 | 14 | 171 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-52 | 14 | 171 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00562 | DAP | Transfer from AT5G53950 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847224 | 0.0 | KC847224.1 Gossypium hirsutum NAC domain protein NAC47 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007021572.2 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 2 | ||||
Swissprot | O04017 | 1e-118 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A061F8R9 | 0.0 | A0A061F8R9_THECC; NAC domain protein, IPR003441, putative | ||||
STRING | EOY13097 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6615 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-105 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG031619t1 |
Entrez Gene | 18594060 |