PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030504t2
Common NameTCM_030504
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 705aa    MW: 75751.4 Da    PI: 5.9025
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030504t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.45.9e-08319335218
                       --SS-EEEEEEE--TT- CS
              WRKY   2 dDgynWrKYGqKevkgs 18 
                       dDgynWrKYGqK+vkg+
  Thecc1EG030504t2 319 DDGYNWRKYGQKQVKGK 335
                       8**************95 PP
2WRKY103.89.6e-33501559159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Thecc1EG030504t2 501 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 559
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508118.88313334IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-6315335IPR003657WRKY domain
SuperFamilySSF1182901.44E-7316347IPR003657WRKY domain
SMARTSM007745.9E-4318346IPR003657WRKY domain
PfamPF031062.2E-4319335IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-37486561IPR003657WRKY domain
SuperFamilySSF1182901.57E-28493561IPR003657WRKY domain
PROSITE profilePS5081138.664496561IPR003657WRKY domain
SMARTSM007741.5E-37501560IPR003657WRKY domain
PfamPF031066.3E-25502559IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MAGIDDNVAI IGDWIPPTPS PRTFFAALLG DDIGSKPVSE THGENKTEGL FLGSRGIMTA  60
ENSDNKDAHQ GHEQLKEFRS ISEQKSSSRG GLVERMAARA GFNAPRLNTE SIRSADLSLN  120
PEICSPYLTI PPGLSPTTLL ESPVFVSNSL AQPSPTTGKF PFIPNGNGRS SFSESSDKSK  180
DNYFEDINAS SFAFKPFAES NSSFLLGAMS KITPASVPQQ SFPNIEVSVQ SENPLPSQNV  240
DPGKVHSQNS NRPSLQADFS RSSTEKDTGS NNSADQRVFD PVGGTAENSP PLDEPQDEEG  300
DQRGSGDCMA GGVGSAPSDD GYNWRKYGQK QVKGKIIYKG AHNHPKPPPN RRSAIGSSNP  360
LTDMQPEVPE QPGLQHGTDG DPVWATAQKG TVAATHDWRH DSIEVTSSAP VGPEYGNVQA  420
PNGTHFESGD AVDASSTFSN DEDEDDRGTH GSVSLGYDGE GDESESKRRK IEAYAPEMSG  480
ATRAIREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTSA GCTVRKHVER  540
ASHDLKSVIT TYEGKHNHDV PAARSSSHVN SATCSTVTAQ GASSVQTHVH RPEPSQLHNS  600
MVRPASFGPY TLPGRQQLGP SPGFSFGMNQ PGLANLAMAG LGPGQAKLPV LPVHPFMPQQ  660
RQMNEMGFML PKGEPKMEPM SEPGLNLSNN STVYQQIMSR LPQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36492562878Probable WRKY transcription factor 4
2lex_A1e-36492562878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021287557.10.0probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A061F5710.0A0A061F571_THECC; WRKY DNA-binding protein 2 isoform 1
STRINGEOY118280.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]