PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG030480t1

Common Name

TCM_030480

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 397aa MW: 43312.8 Da PI: 7.18

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG030480t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	7.6e-34	108	162	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Thecc1EG030480t1 108 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 162 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	105	165	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-32	107	163	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-17	107	162	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-25	108	163	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-9	110	161	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-23	194	240	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MQKSWLWPGL WGWWVCLCVC SASLDFFFPF DFGLQTLSEG RNLTGWVAPR SASSSDDQQM 60 YQPKTVPGSS LVRNNSIVHG QHLDCGASQM DPISGGNSLT NNPNLASKQR LRWTHELHER 120 FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDGKKADKKE 180 TGDMLSNLDG SSGMQITEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR 240 LSGVLAEAPG SGASVPALGD NGLESDKKTD PATPAPTSES PLQDKAAKER APAKSHSIDE 300 SFSSHHEPLT PDSGCHVGSP AGSPKGERLM KKQRVSMAAA FAKPEVVLPH QILESSISSS 360 FQQSHSVFMT REQFDPSSGI SMGNEDQLEK ASGTEL*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MQKSWLWPGL WGWWVCLCVC SASLDFFFPF DFGLQTLSEG RNLTGWVAPR SASSSDDQQM  60
YQPKTVPGSS LVRNNSIVHG QHLDCGASQM DPISGGNSLT NNPNLASKQR LRWTHELHER  120
FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDGKKADKKE  180
TGDMLSNLDG SSGMQITEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR  240
LSGVLAEAPG SGASVPALGD NGLESDKKTD PATPAPTSES PLQDKAAKER APAKSHSIDE  300
SFSSHHEPLT PDSGCHVGSP AGSPKGERLM KKQRVSMAAA FAKPEVVLPH QILESSISSS  360
FQQSHSVFMT REQFDPSSGI SMGNEDQLEK ASGTEL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	108	165	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	108	165	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	108	165	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	108	165	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	108	165	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	108	165	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	108	165	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	108	165	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	108	165	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	108	165	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	108	165	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	108	165	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978582.1	0.0	PREDICTED: myb family transcription factor PHL7
Swissprot	Q9SJW0	1e-138	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A061GGR1	0.0	A0A061GGR1_THECC; Myb-like HTH transcriptional regulator family protein
STRING	EOY29060	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-111	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG030480t1
Entrez Gene	18597377

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]