PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030416t3
Common NameTCM_030416
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family FAR1
Protein Properties Length: 692aa    MW: 80447 Da    PI: 5.963
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030416t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.71.4e-2168159190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                       ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk t +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  Thecc1EG030416t3  68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPLRKKPTGEHHRDRKSVRCGCDAKMYLSKEVidgVSQWFVVQFSNVHNHELL 159
                       59********************8888.*******************************************99867789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1968159IPR004330FAR1 DNA binding domain
PfamPF105514.4E-20291382IPR018289MULE transposase domain
PROSITE profilePS509669.916563598IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-8570597IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-6573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSISSQL VKNESVQSEA MVAPYVGMVF  60
KSDEDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPLR KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEVID GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLNEKREN  240
DTMELLEACK ATKEADQDFV YDYTVDENDK VENIAWSYGD SVNSYTMYGD VVYFDTTYRS  300
ITYDMLFGAW IGIDNNGRPI FFGCVLLQDE TMRSFAWALQ TFISFMKGRC PQTISTDLDP  360
GLRDAIRSEL PSTKHVMSIW NILPKVSSWF PLQLGSQYAE FKSEFDALYR LESTEDFELR  420
WNQMVSIFGL GSDKHITLLY SLRTSWAQSY VRGYFLARMV TTTYSKSVDA FLKGIFSAQT  480
SLRRFFEQVG VAANIQNQPH QEMQHMHLKT CLPIEQHSRQ ILTPFAFNAL QHELIASMQY  540
AASEMANGSY LVRHFRKIDG ESLVIWIPED EQIHCSCKEF ESSGILCRHA LRVFIDKNYF  600
QLPDKYFLSR WRRESSLMFY DDHSVHDNDD EWFQEFQSLT ETLFTESSIT KERSDYMRRE  660
LTKELTRLLN EVRDMPESDG APMDFTLSPA S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026336.20.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_007026338.20.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A061GGF60.0A0A061GGF6_THECC; Far1-related sequence 10 isoform 1
STRINGEOY289580.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]