PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG030409t2 | ||||||||
Common Name | TCM_030409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 508aa MW: 56106.5 Da PI: 9.2737 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.4 | 1.4e-12 | 458 | 504 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 rW+ E+e l++av+++G++ W+ I r + +Rt+ ++k++w+++ Thecc1EG030409t2 458 RWSLHEEEVLAEAVRKYGSH-WSQILRAYPqefMNRTAGDLKDKWRNL 504 9*******************.*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.475 | 451 | 507 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.85E-11 | 454 | 504 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-9 | 455 | 507 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-10 | 458 | 504 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.12E-13 | 458 | 505 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-10 | 458 | 504 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MGEMDDFFHL PAASSLLRKF LSKEEDEMNM SKSDLSTTCL LKKASIVRSI QEGIANGSVP 60 EEILDSLLLI EQVDRKQGLP VFDSMKAAFC AVALHCTLAS LTRSWPCYYD AVQRIWRSRI 120 RILEDSASSE LVGPDLDKWR KEVEAALWDS EASQTLLRIN TRGDALRCLR VYVDEARSSM 180 KPAFLRLTLA ASPASGRPHC GTDKGKGILR VNPQRRCKRG VPHRHYKGPV EIADSEEERP 240 SYSKFGSLST SEVNKVQEAL KTSTADLLAV VTDPLPKVLE VAEKVASERA GKTLHTEAIQ 300 GDGNKNTDVP ATSVNPTTAS AQAKRVASDT GGENLSAKAI VEDHSKKGKG VASPSVSPTK 360 DKSDPPPSVN PTTKPAQAKE GNHESQASIH QNEVPRPSLM ERNGTARTYQ WEDSIDGSSQ 420 ELSGGSTRCR LPSPKIKPAS PLKEYEIKRW VRKRKINRWS LHEEEVLAEA VRKYGSHWSQ 480 ILRAYPQEFM NRTAGDLKDK WRNLTGK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007026323.2 | 0.0 | PREDICTED: uncharacterized protein LOC18597314 | ||||
TrEMBL | A0A061GH95 | 0.0 | A0A061GH95_THECC; Uncharacterized protein isoform 1 | ||||
STRING | EOY28946 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 4e-14 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG030409t2 |
Entrez Gene | 18597314 |
Publications ? help Back to Top | |||
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