PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030409t1
Common NameTCM_030409
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 508aa    MW: 56106.5 Da    PI: 9.2737
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030409t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-12458504347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                       rW+  E+e l++av+++G++ W+ I r  +    +Rt+ ++k++w+++
  Thecc1EG030409t1 458 RWSLHEEEVLAEAVRKYGSH-WSQILRAYPqefMNRTAGDLKDKWRNL 504
                       9*******************.*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.475451507IPR017930Myb domain
SuperFamilySSF466896.85E-11454504IPR009057Homeodomain-like
SMARTSM007172.5E-9455507IPR001005SANT/Myb domain
PfamPF002493.5E-10458504IPR001005SANT/Myb domain
CDDcd116602.12E-13458505No hitNo description
Gene3DG3DSA:1.10.10.604.2E-10458504IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGEMDDFFHL PAASSLLRKF LSKEEDEMNM SKSDLSTTCL LKKASIVRSI QEGIANGSVP  60
EEILDSLLLI EQVDRKQGLP VFDSMKAAFC AVALHCTLAS LTRSWPCYYD AVQRIWRSRI  120
RILEDSASSE LVGPDLDKWR KEVEAALWDS EASQTLLRIN TRGDALRCLR VYVDEARSSM  180
KPAFLRLTLA ASPASGRPHC GTDKGKGILR VNPQRRCKRG VPHRHYKGPV EIADSEEERP  240
SYSKFGSLST SEVNKVQEAL KTSTADLLAV VTDPLPKVLE VAEKVASERA GKTLHTEAIQ  300
GDGNKNTDVP ATSVNPTTAS AQAKRVASDT GGENLSAKAI VEDHSKKGKG VASPSVSPTK  360
DKSDPPPSVN PTTKPAQAKE GNHESQASIH QNEVPRPSLM ERNGTARTYQ WEDSIDGSSQ  420
ELSGGSTRCR LPSPKIKPAS PLKEYEIKRW VRKRKINRWS LHEEEVLAEA VRKYGSHWSQ  480
ILRAYPQEFM NRTAGDLKDK WRNLTGK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026323.20.0PREDICTED: uncharacterized protein LOC18597314
TrEMBLA0A061GH950.0A0A061GH95_THECC; Uncharacterized protein isoform 1
STRINGEOY289460.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1478467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-14MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]