PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG030287t1
Common NameTCM_030287
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 203aa    MW: 23447.6 Da    PI: 5.4026
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG030287t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.28.9e-25531812128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       p G+rF Ptde+l+ +yL +k++g+ l++ + i++++iy     ePw++  +  ++ ++ y F+k +kk  +gkr +r + +g+Wk + +  +
  Thecc1EG030287t1  53 PWGYRFVPTDEDLILHYLSNKAKGEALPC-QGITDCEIYGDedkEPWKIFGR--TSAEKFYVFIKLKKK-GKGKRIERRAGRGTWKGQRT-DP 140
                       88***************************.77******9653338****744..455778888888765.6899999999******9866.78 PP

               NAM  92 vlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                       v++++++ +g kk +vf     + ++ k  + +W+m ey+l
  Thecc1EG030287t1 141 VMDSENNPIGFKKLFVFEikdeDSNNVKRCHGHWLMYEYSL 181
                       8888*************9654333444445789******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-2848195IPR003441NAC domain
PROSITE profilePS5100523.50352195IPR003441NAC domain
PfamPF023651.5E-1653181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MTTEVALKSL FSSIEDELFI EYHTQSTTTE VPVLDGEPDL DYYYDESMMT MVPWGYRFVP  60
TDEDLILHYL SNKAKGEALP CQGITDCEIY GDEDKEPWKI FGRTSAEKFY VFIKLKKKGK  120
GKRIERRAGR GTWKGQRTDP VMDSENNPIG FKKLFVFEIK DEDSNNVKRC HGHWLMYEYS  180
LPTETDYVLC AIRNKHATTK PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-175220017170NO APICAL MERISTEM PROTEIN
1ut4_B8e-175220017170NO APICAL MERISTEM PROTEIN
1ut7_A8e-175220017170NO APICAL MERISTEM PROTEIN
1ut7_B8e-175220017170NO APICAL MERISTEM PROTEIN
3swm_A7e-175220020173NAC domain-containing protein 19
3swm_B7e-175220020173NAC domain-containing protein 19
3swm_C7e-175220020173NAC domain-containing protein 19
3swm_D7e-175220020173NAC domain-containing protein 19
3swp_A7e-175220020173NAC domain-containing protein 19
3swp_B7e-175220020173NAC domain-containing protein 19
3swp_C7e-175220020173NAC domain-containing protein 19
3swp_D7e-175220020173NAC domain-containing protein 19
4dul_A8e-175220017170NAC domain-containing protein 19
4dul_B8e-175220017170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026159.21e-139PREDICTED: NAC domain-containing protein 101
TrEMBLA0A061GGU71e-150A0A061GGU7_THECC; Uncharacterized protein
STRINGEOY287811e-151(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-12NAC domain containing protein 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]