PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG030248t1

Common Name

TCM_030248

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 129aa MW: 14436.6 Da PI: 10.3999

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG030248t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.5	3.6e-34	64	117	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ Thecc1EG030248t1 64 PRLRWTPDLHHCFVHAVEHLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 117 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.194	60	120	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-33	60	119	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-16	62	118	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-25	64	118	IPR006447	Myb domain, plants
Pfam	PF00249	6.0E-8	65	116	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MKRVDGDSSL KGSPSSSLDS GSAYYSQSST MRATRRPMDD NLVPEISLKS PTAVVRPYAR 60 SKMPRLRWTP DLHHCFVHAV EHLGGEDRAT PKMVLQIMDV KGLTISHVKS HLQMYRSMKH 120 EQMIRGNT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	65	120	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	65	120	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	65	120	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	65	120	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	65	120	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	65	120	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	65	120	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	65	120	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	65	120	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	65	120	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	65	120	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	65	120	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026112.2	1e-87	PREDICTED: putative two-component response regulator ARR13
TrEMBL	A0A061GH60	1e-89	A0A061GH60_THECC; Homeodomain-like superfamily protein
STRING	EOY28733	2e-90	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG030248t1
Entrez Gene	18597172

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]