PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG030184t1

Common Name

TCM_030184

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 289aa MW: 32175.9 Da PI: 5.516

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG030184t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.2	1.8e-40	10	110	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC+++C+lapyfpaeq++ f+n+hklFG+sn+lk+lk+l++ ++ +am+s+ y++++r + PvyG++gvi++lq q++ +++e Thecc1EG030184t1 10 ACAACKYQRRKCTPECPLAPYFPAEQARVFQNAHKLFGVSNILKILKNLNPAQQAEAMRSIKYQSNVRDQFPVYGCLGVIRQLQYQIQLVEEE 102 7****************************************************************************************** PP DUF260 94 lallkeel 101 l++++++l Thecc1EG030184t1 103 LHAVHAQL 110 *99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.123	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-38	10	107	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MTLKGGTASA CAACKYQRRK CTPECPLAPY FPAEQARVFQ NAHKLFGVSN ILKILKNLNP 60 AQQAEAMRSI KYQSNVRDQF PVYGCLGVIR QLQYQIQLVE EELHAVHAQL EMYRQHHQIS 120 SIADDVPSQL ELGMAPPSNA LPLFNQVPQQ HYNSLAALPV SMQHSYSNSS NVDYSSSYMD 180 SKENVANSLW VQHPFAKNNN TDNGSTMAIQ SQLVAPQTVA VQQQVVQDYD EIHPFFDAID 240 DRQSYIDSKE PYESSSEESL KDTTQSVEHV AENELKSAAA CFSLTSVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-31	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-31	6	113	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007026014.2	0.0	PREDICTED: LOB domain-containing protein 27
Swissprot	Q9STS6	2e-63	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A061GGF8	0.0	A0A061GGF8_THECC; LOB domain-containing protein, putative
STRING	EOY28636	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	5e-57	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Thecc1EG030184t1
Entrez Gene	18597113

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]