PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG029951t1 | ||||||||
Common Name | TCM_029951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 474aa MW: 52508.6 Da PI: 10.4313 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.3e-08 | 8 | 41 | 2 | 36 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36 grW t+E++ll av ++G+++W+++a++++ Rt Thecc1EG029951t1 8 GRWGTWEELLLGGAVLRHGTRDWNLVASELQ-ART 41 9*****************************9.888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-4 | 5 | 41 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-7 | 7 | 42 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00469 | 9 | 56 | No hit | No description |
SMART | SM00297 | 1.2E-17 | 88 | 371 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 2.49E-18 | 261 | 373 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 6.6E-16 | 269 | 372 | IPR001487 | Bromodomain |
Pfam | PF00439 | 6.8E-13 | 277 | 355 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 10.07 | 282 | 352 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.56E-15 | 286 | 362 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 474 aa Download sequence Send to blast |
MGTEMITGRW GTWEELLLGG AVLRHGTRDW NLVASELQAR TISPFAFTPE VCKAKYEDLQ 60 QRYSGCKAWF EELRKQRMLE LRRALEKSED SIGSLESKLE SLKAEKRDDS RIDYDSSQTV 120 SAIPCLKSEG VEFSSKDTSK DDLSAGSFTR EAQTNWSPHC QIPAAVPAEE MDMKPGESLV 180 SEREKVSSID KLADTFCGGQ FQSIRKRRGK RKRKDCSRDA KEGSVGESEF LGPADVASAS 240 PCKETSASNS AQIARSSGIE DQSGGSSKEG IDAMMGIFSS VAENYCASVF RRRLDSQKRG 300 RYKKMILRHM DFDTIRSRIA SNSIMSVKEL FRDMLLVANN AMVFYSKNTR EYKSALLLRH 360 IVTATLRQHF KEYGSKVPIT TFTSSRPMHK LPAKPRSIRP GNRKLPGKAA NNGNAVVGVS 420 HANKKTANAD SPPSVESLPV TKKGSSQPRK VGRGRASQKS ESPMKGRKRA RAR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 206 | 214 | RRGKRKRKD |
2 | 465 | 471 | GRKRARA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007025741.2 | 0.0 | PREDICTED: uncharacterized protein LOC18596921 | ||||
TrEMBL | A0A061GG17 | 0.0 | A0A061GG17_THECC; Bromodomain 4, putative | ||||
STRING | EOY28363 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7607 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42150.1 | 3e-34 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG029951t1 |
Entrez Gene | 18596921 |
Publications ? help Back to Top | |||
---|---|---|---|
|