PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029838t1
Common NameTCM_029838
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 560aa    MW: 63013.3 Da    PI: 5.8776
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029838t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.8e-18311399387
                       EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       k+l++sdv+++gr+vlpk+ ae +   ++ +e+++++++d  s+++W++k+++  ++ks++yvl+ ++ +Fvk+ngL+ gD+++++ d++
  Thecc1EG029838t1 311 KELKNSDVGSLGRIVLPKREAEGNlpTLSDKEGIQVMIKDvYSNQVWTLKYKFwsNNKSRMYVLE-NTGDFVKQNGLEIGDSLTLYEDES 399
                       899***********************555668899*****7888*******99888888889999.*******************94433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-22306401IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-20308400No hitNo description
PROSITE profilePS5086310.489309413IPR003340B3 DNA binding domain
SMARTSM010199.8E-19309413IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-19309401IPR015300DNA-binding pseudobarrel domain
PfamPF023629.7E-15311400IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MTWRLFSIVP LQTENCDLLC KLNLRAALDM ASEWQCSGAD NGHCEVKQTA KTTLKDADIP  60
SSISASLPYD SPFHELLVTD EPKTATFNPK VAPTLSQALS VMENSYTPFT PTTTTTTNTT  120
LRQPDMGWSQ NSEFSIYEPM NLKNFSSTPF STASNSQFHH PPQFVAPSQS LQPPYRHPIE  180
QAGHSLAYPM YPFFLGQNGI EYGVSSSIHA NNGVQGSCFM QTDGLSKEQE RRIMDPYRTK  240
VARIKRKLAR QRSLSLQRNA SSGASTQVDA RRLTSSGADN STDVNNSNDT KRDLYKFCTP  300
DNKRLRVLLR KELKNSDVGS LGRIVLPKRE AEGNLPTLSD KEGIQVMIKD VYSNQVWTLK  360
YKFWSNNKSR MYVLENTGDF VKQNGLEIGD SLTLYEDESK NLGEQYFSII KLERIIAANP  420
PSNHQHSDNE NNYYSNNDHH HMYLPFTCQS RDEEETSLEL LIEQLKHKEQ QETNDLMSLP  480
MDAAYSHRLP EEAKSFLSDA DGVASMETYT PIAATTLQTS STLLRGKAKS VDDFQLNNFD  540
DCYGGLDMLP DVNHYNFSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-502994093110B3 domain-containing transcription factor LEC2
6j9c_D1e-502994093110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021295029.10.0LOW QUALITY PROTEIN: B3 domain-containing transcription factor LEC2
TrEMBLA0A061GF820.0A0A061GF82_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGEOY282060.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.14e-55B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]