PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG029796t1

Common Name

TCM_029796

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 321aa MW: 36046.8 Da PI: 8.4157

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG029796t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.2	4e-50	16	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+ +yLk+k++ ++++ +i++v+iyk++Pw+Lp k+ +e+ew+fFs+rdkky++g+r+nra++sgyWkatg+dk+++ Thecc1EG029796t1 16 LPPGFRFHPTDEELIIHYLKQKASPSSNPPILIIADVNIYKFNPWELPDKAFFGENEWFFFSPRDKKYPNGTRPNRAAASGYWKATGTDKPII 108 79********************999777678***********7777899********************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ +++ g+kk Lvfykg+ pkg+ktdW+m ey l Thecc1EG029796t1 109 SSvGSQCLGMKKALVFYKGHPPKGVKTDWMMTEYML 144 9978888*************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-61	10	171	IPR003441	NAC domain
PROSITE profile	PS51005	57.19	16	171	IPR003441	NAC domain
Pfam	PF02365	2.8E-25	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MFSTLQKQIA RPSASLPPGF RFHPTDEELI IHYLKQKASP SSNPPILIIA DVNIYKFNPW 60 ELPDKAFFGE NEWFFFSPRD KKYPNGTRPN RAAASGYWKA TGTDKPIISS VGSQCLGMKK 120 ALVFYKGHPP KGVKTDWMMT EYMLLDDYFS SQRPKGSMRL DDWVLCRVRQ KSKVPQQLGG 180 RNYSGSSCSP PFSRGYLQGQ EMTIENANIL HGHHQLPAQY QMSPLESEEL DEKGQIMDLQ 240 EGSPEYSLSN SPKTIDSNVR NVLKSIEREL SVGALDELLP SQPDKRLKVS ASDNSPANAS 300 VFQISFPAPS ASYQQHFSEF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-64	15	177	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-64	15	177	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-64	15	177	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-64	15	177	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-64	15	177	19	174	NAC domain-containing protein 19
3swm_B	2e-64	15	177	19	174	NAC domain-containing protein 19
3swm_C	2e-64	15	177	19	174	NAC domain-containing protein 19
3swm_D	2e-64	15	177	19	174	NAC domain-containing protein 19
3swp_A	2e-64	15	177	19	174	NAC domain-containing protein 19
3swp_B	2e-64	15	177	19	174	NAC domain-containing protein 19
3swp_C	2e-64	15	177	19	174	NAC domain-containing protein 19
3swp_D	2e-64	15	177	19	174	NAC domain-containing protein 19
4dul_A	1e-64	15	177	16	171	NAC domain-containing protein 19
4dul_B	1e-64	15	177	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017978342.1	0.0	PREDICTED: NAC transcription factor 56
Swissprot	K4BWV2	1e-72	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A061GFH9	0.0	A0A061GFH9_THECC; NAC domain containing protein 25
STRING	EOY28148	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19285	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	3e-74	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	Thecc1EG029796t1
Entrez Gene	18596778

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]