PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG029774t1 | ||||||||
Common Name | TCM_029774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 28763.3 Da PI: 8.0226 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.4 | 3.7e-36 | 15 | 110 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC +dCv+ap+fpa++++ f+ vhk+FG++nv++ll++l++++r++a++sl +eA a+ +dPv G +g+++kl+++le lk++ Thecc1EG029774t1 15 ACAACKHQRRKCDNDCVFAPHFPANRAHYFREVHKIFGVKNVTNLLEHLDDNDRRRAVESLQWEAFAWKEDPVLGPLGLFKKLEKELELLKEQ 107 7*******************************************************************************************9 PP DUF260 94 lal 96 l+ Thecc1EG029774t1 108 LNN 110 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.726 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-34 | 15 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSSGNGEEVL NSRHACAACK HQRRKCDNDC VFAPHFPANR AHYFREVHKI FGVKNVTNLL 60 EHLDDNDRRR AVESLQWEAF AWKEDPVLGP LGLFKKLEKE LELLKEQLNN PQPVVPYQTK 120 SGLIGFNHNS AGFVANGDDI SIANFGYANS PNLGLDVNMN NYAGFFQRAD NMENQGVNNI 180 PVVPYYPIPE GQGRLVMQER VLDPVVRTTP VLPKQDAQSN QIIGSSMRPA SHQRGSQGRA 240 HAYYDGSVSG PQARRMH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-22 | 16 | 109 | 12 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-22 | 16 | 109 | 12 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007025493.2 | 0.0 | PREDICTED: LOB domain-containing protein 2 | ||||
TrEMBL | A0A061GE10 | 0.0 | A0A061GE10_THECC; LOB domain-containing-like protein | ||||
STRING | EOY28115 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19603 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 3e-26 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG029774t1 |
Entrez Gene | 18596758 |
Publications ? help Back to Top | |||
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