PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029654t1
Common NameTCM_029654
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 287aa    MW: 31421.7 Da    PI: 4.7955
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029654t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.62.9e-2478144259
                       --SS-EEEEEEE--TT-SS-E........EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefpr........sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr        +YYrC+s+ gCp++k+vers+ dp++++itY+ eHnh+
  Thecc1EG029654t1  78 SDSWAWRKYGQKPIKGSPYPRflfssydrGYYRCSSSkGCPARKQVERSRMDPSMLVITYSCEHNHP 144
                       69*****************96444444448*****998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2971146IPR003657WRKY domain
PROSITE profilePS5081128.0772146IPR003657WRKY domain
SuperFamilySSF1182901.26E-2173146IPR003657WRKY domain
SMARTSM007749.6E-3377145IPR003657WRKY domain
PfamPF031065.2E-2179144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDGSFNKANN PFVSEQQLEE NDNVSSENGS ESPPSTTFND MKLASPKKGR RSIQKRVVSV  60
PIKDVEGSRL KGESAPPSDS WAWRKYGQKP IKGSPYPRFL FSSYDRGYYR CSSSKGCPAR  120
KQVERSRMDP SMLVITYSCE HNHPWPASRN NTAAAKQAAA AAAAAAAAAA TATETTTTTA  180
VKAEPSTSQP DTEPEFGTEE KFADLTDDSI LTTRDEFAWF GEMETTSSTV LESPIFTERD  240
NSVADVAMIF PMREEDESLF ADLGELPECS FVFRHQRNVG PQVGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-1955146679Disease resistance protein RRS1
5w3x_D6e-1955146679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017978072.10.0PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP561e-87WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A061GLF90.0A0A061GLF9_THECC; WRKY DNA-binding protein 65, putative
STRINGEOY279440.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.13e-86WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]