PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029630t1
Common NameTCM_029630
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family HSF
Protein Properties Length: 406aa    MW: 45729.7 Da    PI: 4.8391
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029630t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.5e-35141052102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k++e+++d+++++++sws++ +sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +ll
  Thecc1EG029630t1  14 FLTKTFEMVDDPSTDSVVSWSASDKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEDFIRGQPHLL 97 
                       9********************999****************************************9998.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Thecc1EG029630t1  98 KNIHRRKP 105
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.99E-369103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.7E-6410103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.5E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MDDAQGSSSS LPPFLTKTFE MVDDPSTDSV VSWSASDKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEDFI RGQPHLLKNI HRRKPVHSHS MQNLLGQGAS  120
PLTESERQNL TDEIEGLKSE KESLVLELKR HEQERQGFEM QMRLLRERLQ HMEQRQQIMV  180
SSVAQVLQKP GFAINLTPQL EANDRKRRLP RIAYLYDEAG IEDNQKGSSQ IARENADSTS  240
LSNMEPFEQL ESSMVFWENV VHDFGQTNIQ LNSNLELDES TSCAESPAIS GMQLSVDAQH  300
KSPGIDMNSE PATVVASEPV TAKEQAAGST APAAAPAGAN DVFWEQFLTE NPGSTDMQEV  360
QSERKDSDAR KSDSKTGDHG RFCWNMKNVN NLTEKMGHLT PAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-26910324129Heat shock factor protein 1
5d5v_B6e-26910324129Heat shock factor protein 1
5d5v_D6e-26910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025290.10.0PREDICTED: heat stress transcription factor A-4a
SwissprotO494031e-142HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A061GFH20.0A0A061GFH2_THECC; HSF domain class transcription factor
STRINGEOY279120.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-135heat shock transcription factor A4A
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]