PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG029543t1 | ||||||||
Common Name | TCM_029543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 372aa MW: 41594.4 Da PI: 9.6328 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.4 | 3.4e-34 | 163 | 220 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+ Thecc1EG029543t1 163 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSVVITTYEGQHNHP 220 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-35 | 147 | 222 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-30 | 154 | 222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.65 | 157 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-40 | 162 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 163 | 220 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 372 aa Download sequence Send to blast |
MSDHEFRDFY YQAAFHNDQQ GVGETGMYRV SSSLQDPSYM SFTDCLHSSM DYGSLEKAFG 60 LSPSSSEVFS SVEGNQTKQV GAGDLGGNTS EVMTTPNSSV SSSSSEAGCE EDSDKSKKDR 120 QPKGSEDGGE SSKKGNKAKK KGEKKQREPR FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP 180 YPRSYYRCTT QKCTVKKRVE RSFQDPSVVI TTYEGQHNHP LPTTLRGSAA GLFPPSMLTP 240 SPLAGPSFPH ELFMQMPHHM NNQAGSAGSM FAESFSPFQQ YHHQVPDYGL LQDIVPSRLF 300 TDFVQRVALK TNFKEIHVRI LTPKTESKIA TRKPNPTTAP RQQQPWRERK NKGRAKTTSY 360 RTLFSILQAS C* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-29 | 152 | 222 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-29 | 152 | 222 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017978107.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | Q8VWJ2 | 2e-74 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | A0A061GF56 | 0.0 | A0A061GF56_THECC; WRKY DNA-binding protein 28 | ||||
STRING | EOY27787 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1524 | 26 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18170.1 | 5e-61 | WRKY DNA-binding protein 28 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG029543t1 |
Entrez Gene | 18596553 |
Publications ? help Back to Top | |||
---|---|---|---|
|