PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029519t1
Common NameTCM_029519
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 438aa    MW: 49499.2 Da    PI: 10.1794
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029519t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.23.3e-113883145
                      S---SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgk 45
                      kr e++  r +tfs R+ gi KKA EL v LC+  + +++fss gk
  Thecc1EG029519t1 38 KRNEDDGERFITFSERKSGIYKKAIELHVtLCGDGIGILVFSSAGK 83
                      57789999*******************755**************98 PP
2SRF-TF57.61.6e-18174221148
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
            SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 
                       k+ien+  r +tfskRr gi KKA+EL ++C+ae+a i+fs+ gk + 
  Thecc1EG029519t1 174 KKIENEDDRLITFSKRRSGIYKKASELATMCGAEIAFIVFSPAGKPFS 221
                       68******************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.7363091IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-133090IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-1633104IPR002100Transcription factor, MADS-box
PfamPF003192.5E-104187IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-27166225IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.119166226IPR002100Transcription factor, MADS-box
CDDcd002657.68E-35167238No hitNo description
SuperFamilySSF554556.15E-27167244IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-18168188IPR002100Transcription factor, MADS-box
PfamPF003191.4E-22175222IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-18188203IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-18203224IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MKCIPKARTF QPRHHQQRIQ ERTKGLRQTK ACQKIEIKRN EDDGERFITF SERKSGIYKK  60
AIELHVTLCG DGIGILVFSS AGKPFYYGHP SIESITNRCL RHRSLLRRVY EIKIRASASS  120
LPSTNPAQAT NPFASYRHEY FRNEDDHKRN GNISVNKVVG SGKKTRGRQK IEMKKIENED  180
DRLITFSKRR SGIYKKASEL ATMCGAEIAF IVFSPAGKPF SYGHPSVESV VNRYLNQNPL  240
PNDNTHPLVE AHRKVRINTL AQQHNELVTQ LDAEKERGKM LDQLTRGKET KGWWEAPIDQ  300
LNQQELEKLY LSFAELRTSL HSKMKEKSAE ATSSQLALMD PAQLTTPFPA NPFPTYLNEQ  360
VPAQLNAPFP TNPFPTNLNE QVPAQLNAPF PTNPFPTNLN VQVPAQLTTP FPTNPFPTNL  420
NEQVPGFFPP GFGPGRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021295153.10.0LOW QUALITY PROTEIN: myocyte-specific enhancer factor 2A homolog
TrEMBLA0A061GD190.0A0A061GD19_THECC; Agamous 57
STRINGEOY277450.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.19e-44AGAMOUS-like 57
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]