PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029078t1
Common NameTCM_029078
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 276aa    MW: 30283.4 Da    PI: 9.8964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029078t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT+eE+e l+ +v+++G+g Wk I +        ++R+  ++k++w+++
  Thecc1EG029078t1  5 KQKWTAEEEEALLAGVAKHGPGKWKNILKDPDfapylTHRSNIDLKDKWRNL 56
                      79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.003161IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-15456IPR009057Homeodomain-like
SMARTSM007175.4E-9459IPR001005SANT/Myb domain
PfamPF002491.2E-9556IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-15661IPR009057Homeodomain-like
CDDcd116606.94E-22656No hitNo description
SuperFamilySSF467855.98E-16112195IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005266.1E-17113178IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.8E-14115183IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.976115183IPR005818Linker histone H1/H5, domain H15
PfamPF005383.6E-11117176IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALLAGV AKHGPGKWKN ILKDPDFAPY LTHRSNIDLK DKWRNLSVST  60
SAQGSRDKSR APKVKAIVAS LPNTPSSAPA ASRAHIVTTD AVVGDASNSS LDGKNAPRYN  120
TMIFEALSTI KDTNGSDISA IVSYIEQRHE VPPNFRRLLS SRLRRLVSQG KLEKIQNCYK  180
IRKDILMGTK TPTPKQKDIR LRQNSGVVSS GETMEEAAIT AAYKVAEAEN KSFLAAEAVK  240
EAERVSKMAE DTDSMLQLVK EIYEQCSRGE IVLLA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024539.10.0PREDICTED: telomere repeat-binding factor 4
SwissprotF4I7L12e-88TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A061GC920.0A0A061GC92_THECC; Homeodomain-like/winged-helix DNA-binding family protein, putative
STRINGEOY271610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-83MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]