PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG028884t1
Common NameTCM_028884
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 357aa    MW: 38450.9 Da    PI: 6.7997
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG028884t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.2e-13112156347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
  Thecc1EG028884t1 112 PWTEEEHRLFLIGLQKLGKGDWRGIARNFVMSRTPTQVASHAQKY 156
                       8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.108.2E-4222IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.644105161IPR017930Myb domain
SuperFamilySSF466895.01E-17107162IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-18108160IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.6E-11109155IPR009057Homeodomain-like
SMARTSM007173.4E-10109159IPR001005SANT/Myb domain
PfamPF002496.7E-11112156IPR001005SANT/Myb domain
CDDcd001676.29E-9112157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGGGGSGGVG GGVKLFGVRL TDGSIIKKSA SMGNLSSAHY  60
HSSSSAAASP NPDSPLSDHV RDPNHVPDGY LSDDPAAHAS TNRRGERKKG VPWTEEEHRL  120
FLIGLQKLGK GDWRGIARNF VMSRTPTQVA SHAQKYFIRQ SNVTRRKRRS SLFDMVPDDM  180
ATDTPPVPED QVLLPSSQVE EADNANSIPS LNLSLNSEFE HGEAASQETV QETEETMMGS  240
SEFTPMIHGF LPPYLPVPYP FWPPNPAPPH EEKGVEASQH QVLKPIPLLP KEPVNLDELV  300
GMSQLSIGET ENGHREPSPL SLKLLGEPSR QSAFHANAPV GGTDLSKGKT GAIQAV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024302.10.0PREDICTED: uncharacterized protein LOC18596016 isoform X1
SwissprotQ7XC572e-97MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A061GIM00.0A0A061GIM0_THECC; Myb-like transcription factor family protein
STRINGEOY269240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.17e-92MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]
  4. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]