PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG027270t1

Common Name

TCM_027270

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 668aa MW: 77113.6 Da PI: 6.1564

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG027270t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	3.9e-22	60	142	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAke GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++ +w+++++el+HnH ++ Thecc1EG027270t1 60 FYNCYAKEQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMENRRWRIIEVELDHNHLIS 142 9*************99997.66779**********99888.....*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-19	60	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-26	263	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.211	550	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.8E-4	561	588	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	9.1E-4	563	583	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence Send to blast
MDRVSLNTDP VVDDDADEFE IEGDCGITEC IGQSGVIQGE NPLPPAVGME FESYEDVYYF 60 YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF 120 RLMENRRWRI IEVELDHNHL ISPASGKFYK SHKHIGLGTK RALQLDGADE VKKIKLFRTV 180 VIDVEGNESA DLSDGEFRTT SSKSNQLRLK EGDAQAVHNY FSGLQMTDPN FIYVVDLNEK 240 GCLRNLFWID ARSRAAYGYF GDVVVIDTTC LTYKYEVPLV SFVGVNHHGQ SVLLGCGLLA 300 GETIESYTWL FRAWLTCMLG RPPQAIITDQ CRTLQAAVAD VFPRASHCLS LSCIMQKVPE 360 KLGELYEFEA IRMALNNAVY YSLRPEEFEA TWEDMVNRHG IRDHIWLQTL YEDRRRWVPV 420 YLKETSLAGM FPTRPNEVME SFFDGYLDKR TSLKEFLDKY EQALQENHQL ETLADMDSRN 480 SGFTMKSRCY FELQLAKLYT NNILREFERE VEGMYSCFGT RQINVEGQIM TYMVREQIDV 540 EANRRETRDF EVLYNATEME VLCVCGLFNL RGYLCRHALS VLHQNGMEEI PPQYILSRWR 600 KDIKRSYVLN HSCGGIDVNN PVHRYDHLYK CIMQVVEEGR KSQDRYKDTV QALDEILSKL 660 HLVQGHL*

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence Send to blast

MDRVSLNTDP VVDDDADEFE IEGDCGITEC IGQSGVIQGE NPLPPAVGME FESYEDVYYF  60
YNCYAKEQGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMENRRWRI IEVELDHNHL ISPASGKFYK SHKHIGLGTK RALQLDGADE VKKIKLFRTV  180
VIDVEGNESA DLSDGEFRTT SSKSNQLRLK EGDAQAVHNY FSGLQMTDPN FIYVVDLNEK  240
GCLRNLFWID ARSRAAYGYF GDVVVIDTTC LTYKYEVPLV SFVGVNHHGQ SVLLGCGLLA  300
GETIESYTWL FRAWLTCMLG RPPQAIITDQ CRTLQAAVAD VFPRASHCLS LSCIMQKVPE  360
KLGELYEFEA IRMALNNAVY YSLRPEEFEA TWEDMVNRHG IRDHIWLQTL YEDRRRWVPV  420
YLKETSLAGM FPTRPNEVME SFFDGYLDKR TSLKEFLDKY EQALQENHQL ETLADMDSRN  480
SGFTMKSRCY FELQLAKLYT NNILREFERE VEGMYSCFGT RQINVEGQIM TYMVREQIDV  540
EANRRETRDF EVLYNATEME VLCVCGLFNL RGYLCRHALS VLHQNGMEEI PPQYILSRWR  600
KDIKRSYVLN HSCGGIDVNN PVHRYDHLYK CIMQVVEEGR KSQDRYKDTV QALDEILSKL  660
HLVQGHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007023280.2	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A061G8J5	0.0	A0A061G8J5_THECC; Far1-related sequence 6
STRING	EOY25901	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Thecc1EG027270t1
Entrez Gene	18595323

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]