PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026992t1
Common NameTCM_026992
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 427aa    MW: 45364.1 Da    PI: 5.0349
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026992t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.8e-31216274259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Thecc1EG026992t1 216 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 274
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-31209276IPR003657WRKY domain
PROSITE profilePS5081133.109210276IPR003657WRKY domain
SuperFamilySSF1182902.75E-26213276IPR003657WRKY domain
SMARTSM007741.4E-37215275IPR003657WRKY domain
PfamPF031068.8E-26217274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGCGSGHGAS DVPASSWQQF PSASDPLNFA SSAMEVDRVK AFGDPFSTMR DPLLHELNVA  60
AAAGSTYFSS PTSTVNDTSN FPGASNTVGH DKIFEDDMRT STPCNIFSRI QISPSSSKLA  120
VSPCDSPPLM AAAGGVGVGV GVSPRGIKAP AVLPSEMINA NSSKGCLIDN TGPLQISSPR  180
NLGIKRRLGK SQAKKVVCIP APAAANSRSS GEVVPSDLWA WRKYGQKPIK GSPYPRGYYR  240
CSSSKGCSAR KQVERSRTDP NMLVITYTSE HNHPWPTQRN ALAGSTRSQP SKNNASSSKS  300
SPSSQPLSSL NSKDELKESS SDALSPAVAA SSTASASVKE EFEDIEKQLD IDDAEFGEGM  360
PQTYRPALPD SQAQSEDFFA DLDEIEADPL NLLFPQGFTE EEQKENKAMD PFSLFDWSSG  420
DNNASF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25190277280Disease resistance protein RRS1
5w3x_D2e-25190277280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022995.20.0PREDICTED: probable WRKY transcription factor 14 isoform X1
SwissprotQ9SA801e-102WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A061G9010.0A0A061G901_THECC; WRKY DNA-binding protein 14, putative
STRINGEOY256170.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.19e-99WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]