PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026451t1
Common NameTCM_026451
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 303aa    MW: 33377.7 Da    PI: 8.632
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026451t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.9e-17229263135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  Thecc1EG026451t1 229 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 263
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.107.9E-14222260IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.596223259IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-14223277IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15224287No hitNo description
CDDcd002023.76E-11228275No hitNo description
PfamPF003206.0E-15229263IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDFCQNVSVS GEYHQEQVLS SPCSKLGATL ATTGTLDDLF PAQNTEVDKS LEWLSIFVED  60
CLSSTGNCIP VAATTNVQNK STTTATKPAQ SLQQKPQQII PPSLQKFVVP GKARSKRKRV  120
AATTLSKTKM NPFTSWSYQL NSHNQNLHLA SSDPPLLQQA YWLADSELIV PKKEDDSNNS  180
SSNMRGNSET EESKKEEMEG EKTVVVCKES LGSLEGNSGQ QQQQQPRRCT HCLAQRTPQW  240
RAGPLGPKTL CNACGVRYKS GRLLPEYRPA KSPTFVSYLH SNSHKKVMEM RMALLSSIPS  300
EQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0892503e-58BT089250.1 Soybean clone JCVI-FLGm-1B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030701.10.0PREDICTED: GATA transcription factor 2
TrEMBLA0A061F2V50.0A0A061F2V5_THECC; GATA transcription factor 9, putative
STRINGEOY112030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17095911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-40GATA transcription factor 9
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]