PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026408t1
Common NameTCM_026408
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GeBP
Protein Properties Length: 433aa    MW: 47176.8 Da    PI: 4.4175
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026408t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.82.1e-35131233297
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk.......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                       lfqrlw++eDei lLqG++d+++++ +       + ++d+  fy+++k++++++++k+qlveK+rrLKkK+++ ++k++sgk++sf+++hdq 
  Thecc1EG026408t1 131 LFQRLWTDEDEIELLQGFLDYTSSKTTsnsssshHHHHDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVMNKISSGKDFSFKSPHDQA 223
                       79*******************988877666644333459999*************************************************** PP

            DUF573  88 ifelskkiWg 97 
                       +fe+s+kiW 
  Thecc1EG026408t1 224 TFEISRKIWS 233
                       *********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-33132233IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MASEQYDAVL EESQDDDEEP SSSDNDLDEN DDVLNGNDDV LNDEEDEELL EEEEDINSPS  60
LLPQPIAAAA SAVSSAAIPA VPLAVPSATA VTIAAVPNDE SPPDSKRQRI ESAVTEKKPP  120
PPSQFDESRR LFQRLWTDED EIELLQGFLD YTSSKTTSNS SSSHHHHHDT ALFYDQIKSK  180
LQLDFNKNQL VEKLRRLKKK YRNVMNKISS GKDFSFKSPH DQATFEISRK IWSNCVGKVE  240
DNVLDDDENN NNNNVNLIDE SGEKKNFTPK SAASKKRSRS KGGKMEEKRV LNDGFVITYN  300
NNNNNNLNNR STNDNGSVEG FGGGGGGGNV AGVIEETVRS CLTPLFKELL GSVIGGGGGG  360
CGGRGISGLA MNAMPLNFGG SMNFGGGGGS GELMDERWRK QQILELEVYS KRLELVQDQI  420
KAALEELRSM GG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976960.10.0PREDICTED: mediator-associated protein 1
SwissprotF4K5T41e-97STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLA0A061F1D80.0A0A061F1D8_THECC; DNA-binding storekeeper protein-related transcriptional regulator, putative
STRINGEOY111450.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.28e-51DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]