PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026389t4

Common Name

TCM_026389

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CPP

Protein Properties

Length: 562aa MW: 61883.9 Da PI: 6.6179

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026389t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.2	1e-15	416	453	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCk+skClk+YC+Cfaag +C e C+C+dC+Nk Thecc1EG026389t4 416 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQDCFNKP 453 89**********************************96 PP
2	TCR	54.5	2.3e-17	500	539	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ Thecc1EG026389t4 500 RHKRGCNCKKSSCLKKYCECFQAGVGCSPSCRCEGCKNRF 539 589***********************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.1E-18	414	455	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.591	415	540	IPR005172	CRC domain
Pfam	PF03638	3.7E-11	417	452	IPR005172	CRC domain
SMART	SM01114	2.8E-17	500	541	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.1E-13	502	538	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MDTPDKTQIT PTPSLSKFED SPVFKYINSL SPIELAKFRQ TDNAFNSLAF LSPSSLFPSP 60 QISCHRESRF SVKRHHFSAA SNSSVLQSSN DLNTDEGASK AIEQSYLYDE QPGCLNSGSS 120 SKGVSSDQLD DQSDLAIELP RTLKYDCGSP DGNLEPCDEI LKNTSEKVAG HEASPFQHNK 180 DEGEERQMSF ENERDLRKIR RIMRSEESAG CDWVAIVSDV ADLLTTNSSI IYENIEGQDR 240 RTADPGTTSF ISTILQFPLD NSNNLENTET GDPSGSCKQS KLGVPVTDQT PAILSTCLLD 300 KLVVSDSGLN KDDKGEKCNQ SSHQQRSIRR RCLVFEKSPG FGLHLNSLAN TSNDQSPLSK 360 LTPSTMKRDE VPHHNKAVVT DNSPETPATV SGNETDLNSP EKKRTKFEHV EENAACKRCN 420 CKRSKCLKLY CDCFAAGLYC IEPCSCQDCF NKPIHENKVL ETRRQIESRN PLAFAPKVIR 480 STDSVSDSGG ETNKTPASAR HKRGCNCKKS SCLKKYCECF QAGVGCSPSC RCEGCKNRFG 540 RKGGESLSGT VWLNTNINVW N*

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MDTPDKTQIT PTPSLSKFED SPVFKYINSL SPIELAKFRQ TDNAFNSLAF LSPSSLFPSP  60
QISCHRESRF SVKRHHFSAA SNSSVLQSSN DLNTDEGASK AIEQSYLYDE QPGCLNSGSS  120
SKGVSSDQLD DQSDLAIELP RTLKYDCGSP DGNLEPCDEI LKNTSEKVAG HEASPFQHNK  180
DEGEERQMSF ENERDLRKIR RIMRSEESAG CDWVAIVSDV ADLLTTNSSI IYENIEGQDR  240
RTADPGTTSF ISTILQFPLD NSNNLENTET GDPSGSCKQS KLGVPVTDQT PAILSTCLLD  300
KLVVSDSGLN KDDKGEKCNQ SSHQQRSIRR RCLVFEKSPG FGLHLNSLAN TSNDQSPLSK  360
LTPSTMKRDE VPHHNKAVVT DNSPETPATV SGNETDLNSP EKKRTKFEHV EENAACKRCN  420
CKRSKCLKLY CDCFAAGLYC IEPCSCQDCF NKPIHENKVL ETRRQIESRN PLAFAPKVIR  480
STDSVSDSGG ETNKTPASAR HKRGCNCKKS SCLKKYCECF QAGVGCSPSC RCEGCKNRFG  540
RKGGESLSGT VWLNTNINVW N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-19	417	537	12	120	Protein lin-54 homolog
5fd3_B	2e-19	417	537	12	120	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007030619.2	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X3
TrEMBL	A0A061F265	0.0	A0A061F265_THECC; Tesmin/TSO1-like CXC domain-containing protein, putative isoform 4
STRING	EOY11118	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-85	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Thecc1EG026389t4
Entrez Gene	18600232

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]