PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG026314t2
Common NameTCM_026314
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 313aa    MW: 35554.8 Da    PI: 10.5689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG026314t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY301e-09285303321
                       -SS-EEEEEEE--TT-SS- CS
              WRKY   3 DgynWrKYGqKevkgsefp 21 
                       D+y+WrKYGqK++kgs++p
  Thecc1EG026314t2 285 DEYSWRKYGQKPIKGSPHP 303
                       9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.2E-18236281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.6E-9271303IPR003657WRKY domain
PROSITE profilePS5081111.531278312IPR003657WRKY domain
SuperFamilySSF1182905.1E-7281304IPR003657WRKY domain
PfamPF031068.3E-6285303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEEVEQANKA AIESCHRVLS LLSSPKDQVQ YSNLMMETGE AVFKFKKVVS LLSNDLSHAR  60
VRKLKKFRST LPQKIFLESP NCRTILSPKP LQVYRSNLFD KPPFDLDARA KNHLQLTPKV  120
FFENPSFEMN SSVKPSLRTA QIKPSQDYHF VHHQQQMQRL QFQQQQVKYQ ADMAFSKNNS  180
GMNIKFDGSS CTPTMSSTRS FVSSLSMDGS VTNLDGNSFH LIGMPHHFDQ ISQQSRRRCS  240
GRAEDGSMKC GTTGKCHCSK RRKLRIKRSI KVPAISNKVA DIPPDEYSWR KYGQKPIKGS  300
PHPSLRIITM TN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030538.10.0PREDICTED: probable WRKY transcription factor 74 isoform X1
RefseqXP_017976049.10.0PREDICTED: probable WRKY transcription factor 74 isoform X2
SwissprotQ93WU62e-87WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A061F1W70.0A0A061F1W7_THECC; WRKY DNA-binding protein 21 isoform 2
STRINGEOY110400.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.12e-77WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]