PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG026314t1

Common Name

TCM_026314

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 353aa MW: 40110.9 Da PI: 10.3164

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG026314t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.6	9.6e-32	285	342	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ Thecc1EG026314t1 285 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGEHNHS 342 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	8.5E-18	236	281	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.7E-34	271	342	IPR003657	WRKY domain
PROSITE profile	PS50811	30.194	278	344	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-27	281	342	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	283	343	IPR003657	WRKY domain
Pfam	PF03106	2.9E-27	285	341	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MEEVEQANKA AIESCHRVLS LLSSPKDQVQ YSNLMMETGE AVFKFKKVVS LLSNDLSHAR 60 VRKLKKFRST LPQKIFLESP NCRTILSPKP LQVYRSNLFD KPPFDLDARA KNHLQLTPKV 120 FFENPSFEMN SSVKPSLRTA QIKPSQDYHF VHHQQQMQRL QFQQQQVKYQ ADMAFSKNNS 180 GMNIKFDGSS CTPTMSSTRS FVSSLSMDGS VTNLDGNSFH LIGMPHHFDQ ISQQSRRRCS 240 GRAEDGSMKC GTTGKCHCSK RRKLRIKRSI KVPAISNKVA DIPPDEYSWR KYGQKPIKGS 300 PHPRGYYKCS SVRGCPARKH VERCLEDPSM LIVTYEGEHN HSRLLSTQSA HT*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MEEVEQANKA AIESCHRVLS LLSSPKDQVQ YSNLMMETGE AVFKFKKVVS LLSNDLSHAR  60
VRKLKKFRST LPQKIFLESP NCRTILSPKP LQVYRSNLFD KPPFDLDARA KNHLQLTPKV  120
FFENPSFEMN SSVKPSLRTA QIKPSQDYHF VHHQQQMQRL QFQQQQVKYQ ADMAFSKNNS  180
GMNIKFDGSS CTPTMSSTRS FVSSLSMDGS VTNLDGNSFH LIGMPHHFDQ ISQQSRRRCS  240
GRAEDGSMKC GTTGKCHCSK RRKLRIKRSI KVPAISNKVA DIPPDEYSWR KYGQKPIKGS  300
PHPRGYYKCS SVRGCPARKH VERCLEDPSM LIVTYEGEHN HSRLLSTQSA HT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-20	281	341	12	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007030538.1	0.0	PREDICTED: probable WRKY transcription factor 74 isoform X1
Swissprot	Q93WU6	1e-124	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A061F110	0.0	A0A061F110_THECC; WRKY DNA-binding protein 21 isoform 1
STRING	EOY11040	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3567	28	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	1e-114	WRKY DNA-binding protein 74

Link Out ? help Back to Top
Phytozome	Thecc1EG026314t1
Entrez Gene	18600165

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]