PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025473t1
Common NameTCM_025473
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 240aa    MW: 28029.4 Da    PI: 7.1901
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025473t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.84.5e-1921621128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee....vikevdiykvePwdLpk......kvka.....eekewyfFskrdkkyatgk.. 72 
                       l pG+ F+Ptd e+v++yL + ++g+     l        +++  d+y+ +P+ L +      +  +     + ++ +fFs+r+++ a+ +  
  Thecc1EG025473t1   2 LSPGYVFDPTDREIVSYYLPRLIAGRGntafL---GnlsyFFNVRDVYSRKPSLLFEtsnngeR--KplpfmKGNQRFFFSSRRQRVAETNsd 89 
                       579**********************9955542...1333246777**********643444440..044444667889999999888754323 PP

               NAM  73 ..rknratk.......sgyWkatgkdkevlsk...kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                           +r+++       +g Wk    ++++++    +++  g+ + L f+     ++++++  k++W+m ey l
  Thecc1EG025473t1  90 wkSYRRTVQeegqgepQGCWKRNSVTQPIFDDqneEKKILGCVNLLGFFeyrigENNKKEDIKSNWIMYEYYL 162
                       32233332234445559*************9866566669*********7777667888889*********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.872178IPR003441NAC domain
SuperFamilySSF1019418.24E-252178IPR003441NAC domain
PfamPF023652.2E-134161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MLSPGYVFDP TDREIVSYYL PRLIAGRGNT AFLGNLSYFF NVRDVYSRKP SLLFETSNNG  60
ERKPLPFMKG NQRFFFSSRR QRVAETNSDW KSYRRTVQEE GQGEPQGCWK RNSVTQPIFD  120
DQNEEKKILG CVNLLGFFEY RIGENNKKED IKSNWIMYEY YLLADRFQDW VICKIKDKNR  180
SEEDEFDARL LHRLFSPKET VVADGSQTET QPVPSQSSNL VQARRDFDLN ELPRDSPSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007029590.21e-177PREDICTED: NAC domain-containing protein 37
TrEMBLA0A061F0931e-177A0A061F093_THECC; Uncharacterized protein
STRINGEOY100921e-177(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16333214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-07NAC domain containing protein 42
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]