PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG025260t1 | ||||||||
Common Name | TCM_025260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 452aa MW: 49030.1 Da PI: 8.5111 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.5 | 1.6e-11 | 61 | 87 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p Thecc1EG025260t1 61 PGEPDCSYYIRTGLCRFGATCRFNHPP 87 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 108 | 132 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Thecc1EG025260t1 108 QPECQYYLKTGTCKFGATCKFHHPR 132 799********************96 PP | |||||||
3 | zf-CCCH | 37.8 | 3.1e-12 | 154 | 178 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ Thecc1EG025260t1 154 EPECAYYLRTGQCKFGSTCKFHHPQ 178 799********************97 PP | |||||||
4 | zf-CCCH | 36.1 | 1.1e-11 | 312 | 338 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G C+F+H++ Thecc1EG025260t1 312 PGQPECQFYMKTGDCKFGTVCRFHHPR 338 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.7 | 4e-13 | 358 | 384 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF+H++ Thecc1EG025260t1 358 PGEPLCIFYSRYGICKFGPSCKFNHPM 384 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.1E-5 | 60 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.587 | 60 | 88 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-8 | 62 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 65 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-4 | 66 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-10 | 108 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-6 | 109 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.9E-5 | 111 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.817 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.5E-6 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-10 | 154 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-6 | 154 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-4 | 157 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 311 | 338 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.399 | 311 | 339 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-8 | 313 | 338 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 315 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 317 | 339 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.727 | 357 | 385 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-7 | 357 | 384 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 359 | 384 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.24E-5 | 360 | 384 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-4 | 362 | 382 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MEFSFDAGIP MPRTAAAVAA AAAVAVTEGT SLSPSLNQDA MWQMNLRSSE TMESGPYPER 60 PGEPDCSYYI RTGLCRFGAT CRFNHPPNRK LAIAAARMKG EFPERAGQPE CQYYLKTGTC 120 KFGATCKFHH PRDKAGIAGR VSLNILGYPL RPNEPECAYY LRTGQCKFGS TCKFHHPQPT 180 NMMVSVRGSP IYQTVPSPTT PGQQSYAGGI TNWSRASFIP SPRWQGPSSY APLILPQGVV 240 SVPGWNAYSG QLASVSSSEN LLQTNGNNQY GTTHQNESAT AGSQASFSQF RSGSVPVGFY 300 ALQRENVFPE RPGQPECQFY MKTGDCKFGT VCRFHHPRER VLPAPDCVLS PIGLPLRPGE 360 PLCIFYSRYG ICKFGPSCKF NHPMGIFTYN YSTSSPSDAP VHRLLGSSSG TAGLNLSSEG 420 LVEAGSTKTR RLSLSENRQL SSSDDNIDTE G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007029391.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A061EZ03 | 0.0 | A0A061EZ03_THECC; Zinc finger CCCH domain-containing protein 33 isoform 1 | ||||
STRING | EOY09893 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3389 | 28 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG025260t1 |
Entrez Gene | 18599382 |
Publications ? help Back to Top | |||
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