PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG025248t2
Common NameTCM_025248
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 729aa    MW: 78775.6 Da    PI: 6.3715
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG025248t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.84.5e-33269326260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g Hnh+k
  Thecc1EG025248t2 269 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-DGQITEIIYKGAHNHPK 326
                       7****************************************.***************85 PP
2WRKY101.55.1e-32488546159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver++++ k+v +tY g+Hnhe
  Thecc1EG025248t2 488 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHNLKCVLTTYDGKHNHE 546
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-29262327IPR003657WRKY domain
SuperFamilySSF1182904.84E-26266327IPR003657WRKY domain
SMARTSM007743.4E-37268326IPR003657WRKY domain
PfamPF031062.4E-25269325IPR003657WRKY domain
PROSITE profilePS5081123.445269327IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-35473548IPR003657WRKY domain
SuperFamilySSF1182901.44E-27481548IPR003657WRKY domain
PROSITE profilePS5081136.747483548IPR003657WRKY domain
SMARTSM007743.9E-36488547IPR003657WRKY domain
PfamPF031065.6E-24489546IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDHNVTVFTN RQESVTADDD DDDSKTADYG GGAGGGGGFG KRGGSIAERR AATCGFKAER  60
ISTARFRAST SPLASPSARS PYLTIPPGIS PTALLDSPIM LPNAQVSPTT GTFPVPFLNH  120
DSQVLNPSNG DRGSNIVSSF TFKPQNLDSQ PSFSSLEDQV SSSFNLVQSA EVHCQRLAKL  180
EPPLDFEFPA EFSKKASSMN SAAVSVADVK VLNDIVNDNA NLGFHPSELA SDEMPMPKEP  240
LLGQDVNTHL SEGDQKGINT AMGMARTSED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCQ  300
VKKKVERSLD GQITEIIYKG AHNHPKPLPC RRPSIGSTLS SDEMSEIAEG GGTCVKVEGG  360
LIWRNAQAGS RDIKLGSDWR ADGLERTSST SVVTDLSDPL STAQGKSFGA FELAETPEFS  420
STLASHDDDN DDRATQGSIS LCDDAANDDE SESKRRKTES CLTEMNATSG ALREPRVVVQ  480
IESDVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTTPGCP VRKHVERASH NLKCVLTTYD  540
GKHNHEVPAA RSSSHVNSSG CNLPPTVPNT QAALALARNT NALKPETPIQ DIVPPFDQKP  600
EFKNEYLRPS FLRDFSNEMK LGAASLASVY QMKFPSIQNT IPYGSFGVNP NCIAAHQSGS  660
LASTVPNFPM SLPLNHPTSA NLSLAGFDIN NGGKSTGPTH SFLPGQQLKE STTRFLGIKQ  720
EVWSLAWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-34257549178Probable WRKY transcription factor 4
2lex_A7e-34257549178Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3311710.0AY331171.2 Theobroma cacao WRKY 11 (tcw11) gene, tcw11-1 allele, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976834.10.0PREDICTED: probable WRKY transcription factor 2
TrEMBLA0A061F5S40.0A0A061F5S4_THECC; WRKY DNA-binding protein 2, putative isoform 2
STRINGEOY098780.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-110WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]