PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG025116t1

Common Name

TCM_025116

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 293aa MW: 33258.4 Da PI: 7.6281

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG025116t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90	3.3e-28	129	216	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y+ ++GF +r++++++sk +g+i++r +vC+keg+r++ +++ +k+ r+ra tr+gCka++ ++k+++gkw++tk+++eH+H+la Thecc1EG025116t1 129 FYSAYGMRMGFITRMNYHNRSKIDGSIVSRALVCNKEGYRKPYRRD-VKNVRSRAPTRVGCKAMISIRKMSTGKWVITKFVKEHTHPLA 216 9****************************************999.**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-25	129	216	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MIFRSSAVKT IKFMETELDN DVQLEQTDNV TRGEVLDDST DKGHQLRNDV QLEQTDNDIR 60 GEVLDNATNF EYQLGNDGTM AGSSVQYGSQ VEENDKITLN SSGVQLTVVE GDEPYVGQEF 120 ENEAAAHAFY SAYGMRMGFI TRMNYHNRSK IDGSIVSRAL VCNKEGYRKP YRRDVKNVRS 180 RAPTRVGCKA MISIRKMSTG KWVITKFVKE HTHPLAGCQA QKALISNQMP NEDKRVQELT 240 QQLLIERKRS ASLRRFIDLL FNHIDEHTQG LSKRIQYIVD SVNKIESEGK NR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017976236.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017976237.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Refseq	XP_017976238.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A061F5E8	0.0	A0A061F5E8_THECC; Far-red impaired responsive family protein, putative
STRING	EOY09724	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22968	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-74	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG025116t1
Entrez Gene	18599264

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]