PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024895t1
Common NameTCM_024895
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 694aa    MW: 76616.9 Da    PI: 7.1679
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024895t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.4e-111064147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqky 47
                      ++ W t+E++ll++av+++G+++W+++a +++        + +t+ +c+ ++q +
  Thecc1EG024895t1 10 KQTWGTWEELLLACAVHRYGTESWDSVAMELQkrtstlrhLFLTPLSCQQKFQEL 64
                      789*****************************77777777777777777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.4E-6967IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-4945IPR009057Homeodomain-like
PfamPF002491.4E-101064IPR001005SANT/Myb domain
CDDcd001672.05E-61265No hitNo description
SMARTSM002977.1E-12152411IPR001487Bromodomain
Gene3DG3DSA:1.20.920.107.3E-15283407IPR001487Bromodomain
SuperFamilySSF473703.01E-17302407IPR001487Bromodomain
CDDcd043693.75E-14313406No hitNo description
PfamPF004397.1E-11318396IPR001487Bromodomain
PROSITE profilePS5001414.458321392IPR001487Bromodomain
PROSITE patternPS006330326384IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MAKPDNFPEK QTWGTWEELL LACAVHRYGT ESWDSVAMEL QKRTSTLRHL FLTPLSCQQK  60
FQELKLRFAE NDAGGDDAKT TNNITTAVPW LDELRKLRVA ELRREVQQYD LSIVSLQLKV  120
QRLKEEREQS LGDNGKETEK TDLEREEESN KKEEENEPEN QIQKPVHAGE ESDRENRSVN  180
ESNSTDPKDE SPEAGPEEAK VEPVPVEPEG GETGKEMESE KPAGEDSCNG SCDSVAKESA  240
GNSERGDPGT EPGDSPESVA ESKGEEPNRE SSDVQSSASL SGKEKKKAEP DEPDNEELDQ  300
SPAIKVSIES QPLVEFLEIF RSHNLGSLFE RRLDGQETPD YLNLVRQHLD FETIRTRLEE  360
GWYSGCKSKF FRDLLLLLNN AIVFFGKKSS EYAAAVELRP LVSKEIAVQI PNTNLLPKAQ  420
SYTLLESQMP MKPEPEPALS LSMKPKLSVP LIACRKRSSI TAKASTSSSG QDKKRQPIAT  480
LMNEKPVLDW KQHDKSSEKA EESLVTKKRT RERSASGARK ASKNVKTRSN TSTNKNSDAN  540
TNTAISSKGG SSNEDSESKA EKEKTNANIS SKKRSAANFL NRMRRSSSSN NGPLIETLKG  600
VISSDNGKGD GGEQKKNSNS KGDQRKDQIS TPRTRSGGKR AKEMGSPAKR STGRPPKRAA  660
APSPATPSVP AKRGREVVEN ELGSGHAKKR SRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976904.10.0PREDICTED: pinin
TrEMBLA0A061EYH00.0A0A061EYH0_THECC; DNA-binding bromodomain-containing protein, putative
STRINGEOY094770.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-74DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]