PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG024579t1
Common NameTCM_024579
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28901.4 Da    PI: 6.4126
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG024579t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      k+ien   rqvtfskRrng+lKKA ELS+LCdaev vi+fsstgk+y +ss
  Thecc1EG024579t1  9 KKIENLNSRQVTFSKRRNGLLKKARELSILCDAEVGVIVFSSTGKVYQWSS 59
                      68***********************************************96 PP
2K-box54.84.1e-19841721299
             K-box  12 akaeslq.qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        ++++lq  +++ Lk+e+  L+    +l G++L+ L++keLqqLe+qL++++ +++++K+++lleq+++++ +e+++  en++Lrk++ 
  Thecc1EG024579t1  84 DEHKNLQpIDVNTLKEEYLRLRAAYMRLNGKELDGLTFKELQQLEHQLNEGILSVKQQKEQILLEQLKRSRLQERQAILENETLRKQIV 172
                       445555525899**************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-32286IPR002100Transcription factor, MADS-box
CDDcd002654.02E-41269No hitNo description
PRINTSPR004043.4E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.45287177IPR002487Transcription factor, K-box
PfamPF014862.3E-1392171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KARELSILCD AEVGVIVFSS TGKVYQWSST  60
SMEHILLRYS RGTTEDPSQE HPSDEHKNLQ PIDVNTLKEE YLRLRAAYMR LNGKELDGLT  120
FKELQQLEHQ LNEGILSVKQ QKEQILLEQL KRSRLQERQA ILENETLRKQ IVELQQNTSS  180
NLLEYNPLQR VSPYSSKAEY DCASEEEDDH ADNNDHSDTS LHLGLPSDVG RKRKVAKIEP  240
VSNETTSQVA SE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22170170MEF2C
5f28_B1e-22170170MEF2C
5f28_C1e-22170170MEF2C
5f28_D1e-22170170MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028680.20.0PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ9M2K87e-68AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLA0A061EXS70.0A0A061EXS7_THECC; AGAMOUS-like 18, putative
STRINGEOY091820.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-59AGAMOUS-like 18
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]