PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG022676t1 | ||||||||
Common Name | TCM_022676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 29707.2 Da PI: 7.983 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.1 | 3.8e-45 | 4 | 138 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +ppGfrF Pt+eelv++yL++k+egk+ +++vi+ vdiy+++PwdLp+ ++++ ++w+fF++r++++a+g r++r t+sgyWka Thecc1EG022676t1 4 MPPGFRFYPTEEELVSFYLHNKLEGKRedlnRLMDRVIPVVDIYDFNPWDLPHfsvyLCHKDPEQWFFFIPRQESEARGGRPKRLTTSGYWKA 96 79*************************6653223347***************546653445667***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 tg+ v+s++++ +g+k+t+vfy+grap+g+kt+W m+ey+ Thecc1EG022676t1 97 TGSPGYVYSSNSRPIGVKRTMVFYNGRAPSGKKTEWKMNEYK 138 *****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-49 | 3 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.448 | 4 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-23 | 5 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEDMPPGFRF YPTEEELVSF YLHNKLEGKR EDLNRLMDRV IPVVDIYDFN PWDLPHFSVY 60 LCHKDPEQWF FFIPRQESEA RGGRPKRLTT SGYWKATGSP GYVYSSNSRP IGVKRTMVFY 120 NGRAPSGKKT EWKMNEYKAI EGEASSPNAA PPTLRQEFSL CRVYKKSKCL RSFDRRPPPG 180 VKIGEAVPRH GNGFGVGKSD HQGTEIADRT TIASSPESSS SGDNHHANRP NQTRESNSSR 240 MVVDDECSFW DLDGFWDPVN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-35 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-35 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-35 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-35 | 4 | 166 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-35 | 4 | 166 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-35 | 4 | 166 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027830.2 | 0.0 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 9e-70 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A061EV89 | 0.0 | A0A061EV89_THECC; NAC domain containing protein 90 | ||||
STRING | EOY08332 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10159 | 10 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-71 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG022676t1 |
Entrez Gene | 18598295 |
Publications ? help Back to Top | |||
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