PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG022059t1
Common NameTCM_022059
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 321aa    MW: 36643.2 Da    PI: 6.1607
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG022059t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.24.4e-25541802128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv..ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       p+G+rF Pt+eelv  yL kkv+g++l+  +++ +++iy    ePw++ ++  +++++ y F+k +kk+ +g+r  r++  g+Wka+ +   v
  Thecc1EG022059t1  54 PMGYRFVPTEEELVLGYLLKKVKGETLPS-QAVIDCEIYGDdkEPWKIFNQ--TSTDKFYVFTKLKKKNGRGRRIDRTAGCGTWKAQNT-YLV 142
                       89**************************9.66778888864349****633..456799**************************9976.778 PP

               NAM  93 lskkgelvglkktLvfy.kg.rapkgektdWvmheyrl 128
                       +++k+++vg  k +vf  kg +++++ + +W+mhe++l
  Thecc1EG022059t1 143 MDSKNNHVGFNKLFVFEvKGsDSNNAINGHWLMHEFSL 180
                       888999**********975547788899********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-2746186IPR003441NAC domain
PROSITE profilePS5100526.43853246IPR003441NAC domain
PfamPF023655.1E-1654180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNCWIIILIN QLSDLGLDHW KQTKSFSQSK TITKTCSQSR MAFDQVMSTT MKFPMGYRFV  60
PTEEELVLGY LLKKVKGETL PSQAVIDCEI YGDDKEPWKI FNQTSTDKFY VFTKLKKKNG  120
RGRRIDRTAG CGTWKAQNTY LVMDSKNNHV GFNKLFVFEV KGSDSNNAIN GHWLMHEFSL  180
LNDKFFRYSR FCILSFLETY SILVILIPCY PALVKGSKKL RIVCMLDYAS LFLLQSDFVL  240
CEIRNKNATG VIQTEKEDCE KGSIVEELES CEDGILTVEE LEDMMIGAEE SFQSEKEDCS  300
KGSTVIKLAS CEVWMDTRGT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-184918113143NO APICAL MERISTEM PROTEIN
1ut4_B1e-184918113143NO APICAL MERISTEM PROTEIN
1ut7_A1e-184918113143NO APICAL MERISTEM PROTEIN
1ut7_B1e-184918113143NO APICAL MERISTEM PROTEIN
4dul_A1e-184918113143NAC domain-containing protein 19
4dul_B1e-184918113143NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976373.11e-159PREDICTED: NAC domain-containing protein 19
TrEMBLA0A061EST80.0A0A061EST8_THECC; Uncharacterized protein
STRINGEOY076880.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.14e-12NAC domain containing protein 19
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]