PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG021921t3

Common Name

TCM_021921

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 453aa MW: 50509.2 Da PI: 10.6129

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG021921t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	362	411	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ ++g k+Rt ++k++w ++ Thecc1EG021921t3 362 RRPFSVAEVEALVQAVEKLGTGRWRD--VKLGafdnaKHRTYVDLKDKWKTL 411 6789999*****************..5666669************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54236	2.39E-6	178	250	IPR029071	Ubiquitin-related domain
CDD	cd01769	0.00725	185	251	No hit	No description
PROSITE profile	PS51294	14.034	357	416	IPR017930	Myb domain
SMART	SM00717	8.8E-7	361	414	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-10	362	412	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.1E-15	363	443	IPR009057	Homeodomain-like
CDD	cd11660	1.04E-16	363	413	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MLEMDCKPHA LFCSESKLKA SLFEDWITLR PSGHADNIET VDRDDDENDT GCTQAATTVK 60 AFRLPSDVAD QRIKNLSAGR HWRVSPNLNG GASFKNDGKR RSFFRNGRTS YTRQRSQRIS 120 PFNRRKLFNQ FPFSVPDRGF QFEDKFNSAD KRSNCDNCTA AVGVASSVAR RHSQPGPRDR 180 NVKLRIKSFT VPELFVEIPT TATVGSLKRT VMEAVTTVLG DGLHVGIFLQ GKKVRDDSKT 240 LFQTGISQDH KHRNLGFALE PRHAQIIPPP GPGEQGLTRH ATSLTPEPGT SSVSLVPPLT 300 SWNSGAQSDL HLVSCLSNIS ADRTIPNSQS LVSIPAISVE ALAVVPFHHR PGCHEFVQRR 360 IRRPFSVAEV EALVQAVEKL GTGRWRDVKL GAFDNAKHRT YVDLKDKWKT LVHTARISPQ 420 QRRGEPVPQE LLDRVLAAHA YWSRHQAKQK LK*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MLEMDCKPHA LFCSESKLKA SLFEDWITLR PSGHADNIET VDRDDDENDT GCTQAATTVK  60
AFRLPSDVAD QRIKNLSAGR HWRVSPNLNG GASFKNDGKR RSFFRNGRTS YTRQRSQRIS  120
PFNRRKLFNQ FPFSVPDRGF QFEDKFNSAD KRSNCDNCTA AVGVASSVAR RHSQPGPRDR  180
NVKLRIKSFT VPELFVEIPT TATVGSLKRT VMEAVTTVLG DGLHVGIFLQ GKKVRDDSKT  240
LFQTGISQDH KHRNLGFALE PRHAQIIPPP GPGEQGLTRH ATSLTPEPGT SSVSLVPPLT  300
SWNSGAQSDL HLVSCLSNIS ADRTIPNSQS LVSIPAISVE ALAVVPFHHR PGCHEFVQRR  360
IRRPFSVAEV EALVQAVEKL GTGRWRDVKL GAFDNAKHRT YVDLKDKWKT LVHTARISPQ  420
QRRGEPVPQE LLDRVLAAHA YWSRHQAKQK LK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2juh_A	2e-52	346	452	1	107	Telomere binding protein TBP1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006362	1e-37	AP006362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT34B12, TM0147a, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007027001.2	0.0	PREDICTED: telomere repeat-binding protein 2 isoform X2
TrEMBL	A0A061ERM6	0.0	A0A061ERM6_THECC; Telomeric DNA binding protein 1, putative isoform 1
STRING	EOY07501	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	5e-95	TRF-like 2

Link Out ? help Back to Top
Phytozome	Thecc1EG021921t3
Entrez Gene	18597744

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]