PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021921t1 | ||||||||
Common Name | TCM_021921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 653aa MW: 72446.7 Da PI: 10.0883 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.4e-07 | 562 | 611 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ ++g k+Rt ++k++w ++ Thecc1EG021921t1 562 RRPFSVAEVEALVQAVEKLGTGRWRD--VKLGafdnaKHRTYVDLKDKWKTL 611 6789999*******************..5666669**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 4.87E-6 | 378 | 450 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 14.034 | 557 | 616 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-7 | 561 | 614 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 562 | 612 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.64E-15 | 563 | 643 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.00E-16 | 563 | 613 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 653 aa Download sequence Send to blast |
MVSGTRLDYG FSGYQVPVFP RASRSARGRV PIRKKGGNSQ KHAFEILASV AGELLQESKI 60 FVPPNCKEDQ QNTPKNIVLK ERDEGQLSKC NHSVQETHDE KTFIQGYHQI YTLNKFSHSQ 120 DRFNLKACSS IKSFDQSEKL CLADQLANVN DRNASPSAKI GNSSLVSGEF SEGQIEDAGA 180 ELSSIQSVKS ATLPVTGSFD MLEMDCKPHA LFCSESKLKA SLFEDWITLR PSGHADNIET 240 VDRDDDENDT GCTQAATTVK AFRLPSDVAD QRIKNLSAGR HWRVSPNLNG GASFKNDGKR 300 RSFFRNGRTS YTRQRSQRIS PFNRRKLFNQ FPFSVPDRGF QFEDKFNSAD KRSNCDNCTA 360 AVGVASSVAR RHSQPGPRDR NVKLRIKSFT VPELFVEIPT TATVGSLKRT VMEAVTTVLG 420 DGLHVGIFLQ GKKVRDDSKT LFQTGISQDH KHRNLGFALE PRHAQIIPPP GPGEQGLTRH 480 ATSLTPEPGT SSVSLVPPLT SWNSGAQSDL HLVSCLSNIS ADRTIPNSQS LVSIPAISVE 540 ALAVVPFHHR PGCHEFVQRR IRRPFSVAEV EALVQAVEKL GTGRWRDVKL GAFDNAKHRT 600 YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLAAHA YWSRHQAKQK LK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 2e-51 | 546 | 652 | 1 | 107 | Telomere binding protein TBP1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006362 | 1e-37 | AP006362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT34B12, TM0147a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007026999.2 | 0.0 | PREDICTED: telomere repeat-binding protein 5 isoform X1 | ||||
TrEMBL | A0A061ERM6 | 0.0 | A0A061ERM6_THECC; Telomeric DNA binding protein 1, putative isoform 1 | ||||
STRING | EOY07501 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22180 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-105 | TRF-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021921t1 |
Entrez Gene | 18597744 |
Publications ? help Back to Top | |||
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