PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG021580t1 | ||||||||
Common Name | TCM_021580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | WRKY | ||||||||
Protein Properties | Length: 1239aa MW: 135151 Da PI: 7.7205 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.9 | 8.6e-33 | 908 | 966 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Thecc1EG021580t1 908 VQDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 966 58****************************************.***************85 PP | |||||||
2 | WRKY | 103.1 | 1.5e-32 | 1071 | 1129 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+ Thecc1EG021580t1 1071 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDLRAVITTYEGKHNHD 1129 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.80.10.10 | 1.2E-40 | 14 | 298 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 4.08E-6 | 65 | 170 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00367 | 10 | 73 | 98 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 210 | 100 | 125 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 23 | 126 | 151 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 29 | 152 | 176 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SuperFamily | SSF52047 | 1.13E-41 | 177 | 527 | No hit | No description |
SMART | SM00367 | 39 | 177 | 202 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 200 | 203 | 227 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
Pfam | PF13516 | 0.012 | 253 | 275 | IPR001611 | Leucine-rich repeat |
SMART | SM00367 | 3.0E-5 | 253 | 278 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
Gene3D | G3DSA:3.80.10.10 | 2.3E-45 | 299 | 516 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF13516 | 0.22 | 329 | 350 | IPR001611 | Leucine-rich repeat |
SMART | SM00367 | 0.0016 | 329 | 354 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 0.0078 | 355 | 380 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 280 | 381 | 406 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
Pfam | PF13516 | 4.3E-5 | 407 | 429 | IPR001611 | Leucine-rich repeat |
SMART | SM00367 | 5.9 | 407 | 431 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 17 | 432 | 456 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 4.6E-4 | 457 | 482 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
SMART | SM00367 | 0.0044 | 483 | 508 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
Gene3D | G3DSA:3.80.10.10 | 2.3E-13 | 517 | 659 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52047 | 1.57E-6 | 521 | 617 | No hit | No description |
SMART | SM00367 | 0.0056 | 534 | 559 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
Pfam | PF13516 | 0.65 | 560 | 582 | IPR001611 | Leucine-rich repeat |
SMART | SM00367 | 4.9 | 560 | 584 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
Gene3D | G3DSA:2.20.25.80 | 2.2E-27 | 897 | 967 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 903 | 967 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-35 | 908 | 966 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.2E-25 | 909 | 965 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.342 | 910 | 967 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.9E-36 | 1056 | 1131 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.22E-28 | 1063 | 1131 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.366 | 1066 | 1131 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-38 | 1071 | 1130 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-25 | 1072 | 1129 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1239 aa Download sequence Send to blast |
MKKQKKECFG GFNPFDLLSE EIIFMILDLL HRNPLDKKSF SLVCKSFYAT ESNHRRTLKP 60 LRQEHLPAIL CRYSNITHLD LTLCSRVTDA SLSIISNACT STLRSVDFSR SRLFSTSGLL 120 GLALNCKNLV EIDLSNGTDL KDSAMAAVAE AKNLEKLWLA RCKSITDLGV GCVAVGCRKL 180 RFVCLKWCLG VGDLGVGLIA VKCKQILYLD LSYLPITNKC LSSVLKLQHL EDLVMEGCFG 240 IDDDSLAVLK HGCKSLKSLD VSTCQNITDS GLSSLISGAE GLQQLTLAHG SPVTSSLADC 300 LKKLSLLQSV KLDGCLITYD GLKTIGNWCL SLRELSLSKC LGVTDEGLSS VVTKHKDLRK 360 LDITCCRKIT DVSVAHITNS CNFLSSLRME SCTLVSRKAF GLIGQQCHLL EELDLTDNEI 420 DDEGLKSISR CSKLSNLKLG ICLNITDEGL IHIGRGCSKL IELDLYRCAE ITDLGILAIA 480 QGCPGLEMIN IAYCKDITDR SLLSLSKCSC LKTFESRGCS RITSLGLTAI AVGCKELSKL 540 DIKKCHNIDD AGMLPLAHFS QNLRQINLSH SSVTDVGLLS LASISCLQNI TILHLKGLTP 600 SGLAAALLAC AGLRKVKLQA AFRWLLPHRL FEHLEARGCG IRSQVLEITV GRSNAIEILE 660 DLVGTNTSNT SSINSQTAFP FSNSNPMAAS SSFMNMDNIN QNRSTSITSW GLSGHQVTDK 720 FGIEIPKFKS LAPSSLPISP APVSPSSYLV TPPAAFSPTD FLDSPVLFST SSIFPSPTTG 780 AFAGQTLNWR SNSNDNQQGI KGEHNNFFDF SFQPQPGPSS TSSSTFQSSS NIVSVEQSTW 840 NFSEPMKQPE LPVEKAARVK SEFAPMQNFS SEMAPSQTTM QQSNTGSQPA GYNQYNQSTQ 900 YTRENRKVQD GYNWRKYGQK QVKGSENPRS YYKCTYPNCP TKKKVERSLD GQITEIVYKG 960 SHNHPKPQST RRSSSHAACT NSEISDQSGG TLGNEQTDSF LVHEDTSGSI GEDEFDQASP 1020 LSNPGGDDNE NEPDAKRWKG ENENEGIIGS GSRTVREPRI VVQTTSDIDI LDDGYRWRKY 1080 GQKVVKGNPN PRSYYKCTTI GCPVRKHVER ASHDLRAVIT TYEGKHNHDV PAARGSGYAI 1140 NRPSTTNNSN APMPIRPSAV PSQASNTSYP NSLQTRLPTS GSQPPVTLEM LQNQGSYGFS 1200 GFGKPIGSYM SQAQFSEGAF ARAKDEPEDD SFFDGFLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-36 | 896 | 1132 | 5 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-36 | 896 | 1132 | 5 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY331168 | 0.0 | AY331168.1 Theobroma cacao WRKY 10 (tcw10) gene, tcw10-1 allele, partial cds. | |||
GenBank | AY331169 | 0.0 | AY331169.1 Theobroma cacao WRKY 10 (tcw10) gene, tcw10-2 allele, partial cds. | |||
GenBank | AY331170 | 0.0 | AY331170.1 Theobroma cacao WRKY 10 (tcw10) gene, tcw10-3 allele, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017977792.1 | 0.0 | PREDICTED: F-box/LRR-repeat protein 3 | ||||
Swissprot | Q8RWU5 | 0.0 | FBL3_ARATH; F-box/LRR-repeat protein 3 | ||||
TrEMBL | A0A061EXQ1 | 0.0 | A0A061EXQ1_THECC; RNI-like superfamily protein | ||||
STRING | EOY07049 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-127 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG021580t1 |
Entrez Gene | 18597439 |
Publications ? help Back to Top | |||
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